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  1. Original article

    Genome-wide identification of grain filling genes regulated by the OsSMF1 transcription factor in rice

    Spatial- and temporal-specific expression patterns are primarily regulated at the transcriptional level by gene promoters. Therefore, it is important to identify the binding motifs of transcription factors to ...

    Joung Sug Kim, Songhwa Chae, Kyong Mi Jun, Yoon-Mok Pahk, Tae-Ho Lee, Pil Joong Chung, Yeon-Ki Kim and Baek Hie Nahm

    Rice 2017 10:16

    Published on: 26 April 2017

  2. Original Article

    Diurnal Changes in Transcript and Metabolite Levels during the Iron Deficiency Response of Rice

    Rice (Oryza sativa L.) is highly susceptible to iron (Fe) deficiency due to low secretion levels of the mugineic acid (MA) family phytosiderophore (PS) 2′-deoxymugineic acid (DMA) into the rhizosphere. The low le...

    Jamie Selby-Pham, Adrian Lutz, Laura T. Moreno-Moyano, Berin A. Boughton, Ute Roessner and Alexander A. T. Johnson

    Rice 2017 10:14

    Published on: 20 April 2017

  3. Original article

    Identification of QTLs for yield and agronomic traits in rice under stagnant flooding conditions

    Stagnant flooding, where water of 25–50 cm remains until harvest time, is a major problem in rainfed lowland areas. Most of the Sub1 varieties, which can withstand around 2 weeks of complete submergence, perfo...

    Anshuman Singh, Jerome Carandang, Zennia Jean C. Gonzaga, Bertrand C. Y. Collard, Abdelbagi M. Ismail and Endang M. Septiningsih

    Rice 2017 10:15

    Published on: 20 April 2017

  4. Original article

    Distribution, genetic diversity and potential spatiotemporal scale of alien gene flow in crop wild relatives of rice (Oryza spp.) in Colombia

    Crop wild relatives (CWRs) of rice hold important traits that can contribute to enhancing the ability of cultivated rice (Oryza sativa and O. glaberrima) to produce higher yields, cope with the effects of climate...

    Evert Thomas, Eduardo Tovar, Carolina Villafañe, José Leonardo Bocanegra and Rodrigo Moreno

    Rice 2017 10:13

    Published on: 18 April 2017

  5. Original article

    Overexpression of OsHSP18.0-CI Enhances Resistance to Bacterial Leaf Streak in Rice

    The small heat shock proteins represent a large family of proteins that respond to a wide range of abiotic and biotic stresses. OsHsp18.0-CI confers tolerance to salt and cadmium and interacts with viral RNA-d...

    Yanhu Ju, Hongjuan Tian, Ruihua Zhang, Liping Zuo, Guixiu Jin, Qian Xu, Xinhua Ding, Xiangkui Li and Zhaohui Chu

    Rice 2017 10:12

    Published on: 17 April 2017

  6. Original article

    Aldo-ketoreductase 1 (AKR1) improves seed longevity in tobacco and rice by detoxifying reactive cytotoxic compounds generated during ageing

    Maintenance of seed viability is an important factor for seedling vigour and plant establishment. Lipid peroxidation mediated reactive carbonyl compounds (RCC’s) and non-enzymatic modifications of proteins thr...

    Kodadinne Narayana Nisarga, Ramu S Vemanna, Babitha Kodekallu Chandrashekar, Hanumantha Rao, Amaranatha Reddy Vennapusa, Ashwini Narasimaha, Udayakumar Makarla and Mohan Raju Basavaiah

    Rice 2017 10:11

    Published on: 13 April 2017

    The Erratum to this article has been published in Rice 2017 10:19

  7. Original article

    Development and Genetic Characterization of A Novel Herbicide (Imazethapyr) Tolerant Mutant in Rice (Oryza sativa L.)

    Increased water and labour scarcity in major rice growing areas warrants a shift towards direct seeded rice cultivation under which management of weeds is a major issue. Use of broad spectrum non-selective her...

    D. Shoba, M. Raveendran, S. Manonmani, S. Utharasu, D. Dhivyapriya, G. Subhasini, S. Ramchandar, R. Valarmathi, Nitasha Grover, S. Gopala Krishnan, A. K. Singh, Pawan Jayaswal, Prashant Kale, M. K. Ramkumar, S. V. Amitha Mithra, T. Mohapatra…

    Rice 2017 10:10

    Published on: 4 April 2017

  8. Original article

    Genotypic and Environmental Variations in Grain Cadmium and Arsenic Concentrations Among a Panel of High Yielding Rice Cultivars

    Rice is a major dietary source of cadmium (Cd) and arsenic (As) for populations consuming rice as the staple food. Excessive Cd and As accumulation in rice grain is of great concern worldwide, especially in So...

    Guilan Duan, Guosheng Shao, Zhong Tang, Hongping Chen, Boxun Wang, Zhu Tang, Yuping Yang, Yuechuan Liu and Fang-Jie Zhao

    Rice 2017 10:9

    Published on: 28 March 2017

  9. Original article

    Genome-wide Association Analysis Tracks Bacterial Leaf Blight Resistance Loci In Rice Diverse Germplasm

    A range of resistance loci against different races of Xanthomonas oryzae pv. oryzae (Xoo), the pathogen causing bacterial blight (BB) disease of rice, have been discovered and characterized. Several have been dep...

    Christine Jade Dilla-Ermita, Erwin Tandayu, Venice Margarette Juanillas, Jeffrey Detras, Dennis Nicuh Lozada, Maria Stefanie Dwiyanti, Casiana Vera Cruz, Edwige Gaby Nkouaya Mbanjo, Edna Ardales, Maria Genaleen Diaz, Merlyn Mendioro, Michael J. Thomson and Tobias Kretzschmar

    Rice 2017 10:8

    Published on: 21 March 2017

  10. Short communication

    Evolutionary analysis of the SUB1 locus across the Oryza genomes

    Tolerance to complete submergence is recognized in a limited number of Asian rice (Oryza sativa L.) varieties, most of which contain submergence-inducible SUB1A on the polygenic SUBMERGENCE-1 (SUB1) locus. It has...

    Railson Schreinert dos Santos, Daniel da Rosa Farias, Camila Pegoraro, Cesar Valmor Rombaldi, Takeshi Fukao, Rod A. Wing and Antonio Costa de Oliveira

    Rice 2017 10:4

    Published on: 7 February 2017

  11. Original article

    A temporal and spatial contribution of asparaginase to asparagine catabolism during development of rice grains

    Asparagine is one of the most dominant organic nitrogen compounds in phloem and xylem sap in a wide range of plant species. Asparaginase (ASNase; EC, 3.5.1.1) catabolizes asparagine into aspartate and ammonium...

    Yui Yabuki, Miwa Ohashi, Fumi Imagawa, Keiki Ishiyama, Marcel Pascal Beier, Noriyuki Konishi, Toshiko Umetsu-Ohashi, Toshihiko Hayakawa, Tomoyuki Yamaya and Soichi Kojima

    Rice 2017 10:3

    Published on: 25 January 2017

  12. Original Article

    Ability of Rf5 and Rf6 to Restore Fertility of Chinsurah Boro II-type Cytoplasmic Male Sterile Oryza Sativa (ssp. Japonica) Lines

    Three-line Oryza sativa (ssp. japonica) hybrids have been developed mainly using Chinsurah Boro II (BT)-type cytoplasmic male sterility (CMS). The Rf1 gene restores the fertility of BT-type CMS lines, and is the ...

    Honggen Zhang, Jianlan Che, Yongshen Ge, Yan Pei, Lijia Zhang, Qiaoquan Liu, Minghong Gu and Shuzhu Tang

    Rice 2017 10:2

    Published on: 21 January 2017

  13. Original article

    Marker-assisted breeding of the rice restorer line Wanhui 6725 for disease resistance, submergence tolerance and aromatic fragrance

    Rice is a staple food crop in the world. With the increase in world population and economic development, farmers need to produce more rice in limited field. However, the rice production is frequently affected ...

    Yanchang Luo, Tingchen Ma, Aifang Zhang, Kar Hui Ong, Zefu Li, Jianbo Yang and Zhongchao Yin

    Rice 2016 9:66

    Published on: 1 December 2016

  14. Original article

    SMALL GRAIN 11 Controls Grain Size, Grain Number and Grain Yield in Rice

    Grain size is one of key agronomic traits that determine grain yield in rice. Several regulators of grain size have been identified in rice, but the mechanisms that determine grain size and yield remain largel...

    Na Fang, Ran Xu, Luojiang Huang, Baolan Zhang, Penggen Duan, Na Li, Yuehua Luo and Yunhai Li

    Rice 2016 9:64

    Published on: 29 November 2016

  15. Original article

    Suppression of OsVPE3 Enhances Salt Tolerance by Attenuating Vacuole Rupture during Programmed Cell Death and Affects Stomata Development in Rice

    Vacuolar processing enzymes (VPEs) are cysteine proteinases that act as crucial mediators of programmed cell death (PCD) in plants. In rice, however, the role of VPEs in abiotic stress-induced PCD remains larg...

    Wenyun Lu, Minjuan Deng, Fu Guo, Mingqiang Wang, Zhanghui Zeng, Ning Han, Yinong Yang, Muyuan Zhu and Hongwu Bian

    Rice 2016 9:65

    Published on: 29 November 2016

  16. Original article

    QTL Mapping of Grain Quality Traits Using Introgression Lines Carrying Oryza rufipogon Chromosome Segments in Japonica Rice

    Improved eating quality is a major breeding target in japonica rice due to market demand. Consequently, quantitative trait loci (QTL) for glossiness of cooked rice and amylose content associated with eating quali...

    Yeo-Tae Yun, Chong-Tae Chung, Young-Ju Lee, Han-Jung Na, Jae-Chul Lee, Sun-Gye Lee, Kwang-Won Lee, Young-Hwan Yoon, Ju-Won Kang, Hyun-Sook Lee, Jong-Yeol Lee and Sang-Nag Ahn

    Rice 2016 9:62

    Published on: 24 November 2016

  17. Original article

    Genome-wide Association Mapping of Cold Tolerance Genes at the Seedling Stage in Rice

    Rice is a temperature-sensitive crop and its production is severely affected by low temperature in temperate and sub-tropical regions. To understand the genetic basis of cold tolerance in rice, we evaluated th...

    Dan Wang, Jinling Liu, Chengang Li, Houxiang Kang, Yue Wang, Xinqiu Tan, Minghao Liu, Yufei Deng, Zhilong Wang, Yong Liu, Deyong Zhang, Yinghui Xiao and Guo-Liang Wang

    Rice 2016 9:61

    Published on: 15 November 2016

  18. Original article

    Isolation and Characterization of an Aluminum-resistant Mutant in Rice

    Aluminum (Al) toxicity represents a major constraint for crop production on acid soils. Rice is a high Al-resistant plant species among small-grain cereals, but its molecular mechanisms of Al resistance are no...

    Shuo Liu, Huiling Gao, Xiaoyan Wu, Qiu Fang, Lan Chen, Fang-Jie Zhao and Chao-Feng Huang

    Rice 2016 9:60

    Published on: 11 November 2016

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