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  1. The process of moving from collecting plants in the wild to cultivating and gradually domesticating them has as its linguistic corollary the formation of a specific vocabulary to designate the plants and their...

    Authors: Laurent Sagart
    Citation: Rice 2012 4:9077
  2. Type II diabetes is a major chronic disease. In developing countries, the prevalence of type II diabetes is increasing enormously. Much research indicates that choice of carbohydrates, particularly those with ...

    Authors: M. A. Fitzgerald, S. Rahman, A. P. Resurreccion, J. Concepcion, V. D. Daygon, S. S. Dipti, K. A. Kabir, B. Klingner, M. K. Morell and A. R. Bird
    Citation: Rice 2011 4:9073
  3. Submergence tolerance is an important trait where short term flash flooding damages rice. Tolerant landraces that withstand submergence for 1–2 weeks were identified. Due to the heterogeneity in flood-prone ec...

    Authors: Ramani Kumar Sarkar and Bijoya Bhattacharjee
    Citation: Rice 2011 5:7
  4. Plants have developed several morphological and physiological strategies to adapt to phosphate stress. We analyzed the inducible transcripts associated with phosphate starvation and over-abundant phosphate sup...

    Authors: Youko Oono, Yoshihiro Kawahara, Hiroyuki Kanamori, Hiroshi Mizuno, Harumi Yamagata, Mayu Yamamoto, Satomi Hosokawa, Hiroshi Ikawa, Ikuko Akahane, Zuofeng Zhu, Jianzhong Wu, Takeshi Itoh and Takashi Matsumoto
    Citation: Rice 2011 4:9064
  5. Zinc (Zn) is an essential micronutrient with numerous cellular functions in plants, and its deficiency represents one of the most serious problems in human nutrition worldwide. Zn deficiency causes a decrease ...

    Authors: Yasuhiro Ishimaru, Khurram Bashir and Naoko K. Nishizawa
    Citation: Rice 2011 4:9061
  6. In future climates, rice crops will be frequently exposed to water deficit and heat stress at the most sensitive flowering stage, causing spikelet sterility and yield losses. Water deficit alone and in combina...

    Authors: S. V. Krishna Jagadish, Raveendran Muthurajan, Zhongwen W. Rang, Richard Malo, Sigrid Heuer, John Bennett and Peter Q. Craufurd
    Citation: Rice 2011 4:9059
  7. Wild species of rice (genus Oryza) contain many useful genes but a vast majority of these genes remain untapped to date because it is often difficult to transfer these genes into cultivated rice (Oryza sativa L.)...

    Authors: M. Liakat Ali, Paul L. Sanchez, Si-bin Yu, Mathias Lorieux and Georgia C. Eizenga
    Citation: Rice 2010 3:9058
  8. In rice-consuming countries, specific varieties are recognized as premium, “gold standard” varieties, while others are recognized as being superior but second best, despite being identical using the current su...

    Authors: Elaine T. Champagne, Karen L. Bett-Garber, Melissa A. Fitzgerald, Casey C. Grimm, Jeanne Lea, Ken’ichi Ohtsubo, Supanee Jongdee, Lihong Xie, Priscila Zaczuk Bassinello, Adoracion Resurreccion, Rauf Ahmad, Fatemah Habibi and Russell Reinke
    Citation: Rice 2010 3:9057
  9. We present an overview of a research platform that provides essential germplasm, genotypic and phenotypic data and analytical tools for dissecting phenotype–genotype associations in rice. These resources inclu...

    Authors: Chih-Wei Tung, Keyan Zhao, Mark H. Wright, M. Liakat Ali, Janelle Jung, Jennifer Kimball, Wricha Tyagi, Michael J. Thomson, Kenneth McNally, Hei Leung, Hyunjung Kim, Sang-Nag Ahn, Andy Reynolds, Brian Scheffler, Georgia Eizenga, Anna McClung…
    Citation: Rice 2010 3:9056
  10. Repetitive sequences, primarily transposable elements form an indispensable part of eukaryotic genomes. However, little is known about how these sequences originate, evolve and function in context of a genome....

    Authors: Navdeep Gill, Phillip SanMiguel, Braham Deep Singh Dhillon, Brian Abernathy, HyeRan Kim, Lincoln Stein, Doreen Ware, Rod Wing and Scott A. Jackson
    Citation: Rice 2010 3:9054
  11. The main objectives of the “Oryza Map Alignment Project” (OMAP) are to characterize the rice genome from a comparative standpoint by establishing a genus-wide and genome-scale comparative framework from represent...

    Authors: Jose Luis Goicoechea, Jetty Siva S. Ammiraju, Pradeep Reddy Marri, Mingsheng Chen, Scott Jackson, Yeisoo Yu, Steve Rounsley and Rod A. Wing
    Citation: Rice 2010 3:9052
  12. This study characterized Pokkali-derived quantitative trait loci (QTLs) for seedling stage salinity tolerance in preparation for use in marker-assisted breeding. An analysis of 100 SSR markers on 140 IR29/Pokk...

    Authors: Michael J. Thomson, Marjorie de Ocampo, James Egdane, M. Akhlasur Rahman, Andres Godwin Sajise, Dante L. Adorada, Ellen Tumimbang-Raiz, Eduardo Blumwald, Zeba I. Seraj, Rakesh K. Singh, Glenn B. Gregorio and Abdelbagi M. Ismail
    Citation: Rice 2010 3:9053
  13. Rice landraces tolerant of up to 2 weeks of complete submergence were collected from farmers’ fields in the 1950s. Success in fine mapping of SUBMERGENCE 1 (SUB1), a robust quantitative trait locus from the subme...

    Authors: Julia Bailey-Serres, Takeshi Fukao, Pamela Ronald, Abdelbagi Ismail, Sigrid Heuer and David Mackill
    Citation: Rice 2010 3:9048
  14. Long Terminal Repeat retrotransposons (LTR-RTs) are a major component of several plant genomes. Important insights into the evolutionary dynamics of these elements in a genome are provided by the comparative s...

    Authors: Andrea Zuccolo, Aswathy Sebastian, Yeisoo Yu, Scott Jackson, Steve Rounsley, Dean Billheimer and Rod A. Wing
    Citation: Rice 2010 3:9046
  15. One of the major challenges in genetics has been to identify the nucleotide polymorphisms responsible for phenotypic variation. Through intensive analysis, several major quantitative trait loci (QTLs) for agro...

    Authors: Shuichi Fukuoka, Kaworu Ebana, Toshio Yamamoto and Masahiro Yano
    Citation: Rice 2010 3:9044
  16. Iron (Fe) is an important micronutrient for living organisms. Fe deficiency severely impairs plant growth and is a widespread human dietary problem, with particularly high numbers of affected children and fema...

    Authors: Khurram Bashir, Yasuhiro Ishimaru and Naoko K. Nishizawa
    Citation: Rice 2010 3:9042
  17. In plants, polyglutamylated folate forms account for a significant proportion of the total folate pool. Polyglutamylated folate forms are produced by the enzyme folylpolyglutamate synthetase (FPGS). The FPGS e...

    Authors: Nampeung Anukul, Riza Abilgos Ramos, Payam Mehrshahi, Anahi Santoyo Castelazo, Helen Parker, Anne Diévart, Nadège Lanau, Delphine Mieulet, Gregory Tucker, Emmanuel Guiderdoni, David A. Barrett and Malcolm J. Bennett
    Citation: Rice 2010 3:9040
  18. Over the past two decades, genetic dissection of complex phenotypes of economic and biological interest has revealed the chromosomal locations of many quantitative trait loci (QTLs) in rice and their contribut...

    Authors: Jun-ichi Yonemaru, Toshio Yamamoto, Shuichi Fukuoka, Yusaku Uga, Kiyosumi Hori and Masahiro Yano
    Citation: Rice 2010 3:9041
  19. Germin-like protein (GLP) markers were associated with quantitative trait loci (QTL) for resistance to the rice blast pathogen, Magnaporthe oryzae in multiple rice (Oryza sativa) mapping populations. Twelve paral...

    Authors: Rebecca M. Davidson, Patricia M. Manosalva, Jacob Snelling, Myron Bruce, Hei Leung and Jan E. Leach
    Citation: Rice 2010 3:9038
  20. WRKY transcription factors regulate diverse plant processes including responses to biotic stresses. Our previous studies indicate that OsWRKY62, an OsWRKY IIa subfamily member, functions as a negative regulato...

    Authors: Ying Peng, Laura E. Bartley, Patrick Canlas and Pamela C. Ronald
    Citation: Rice 2010 3:9039
  21. Carbon isotope discrimination (∆13C) is considered as an index of leaf-level water use efficiency, an important objective for plant breeders seeking to conserve water resources. We report in rice a genetic analys...

    Authors: Dominique This, Jonathan Comstock, Brigitte Courtois, Yunbi Xu, Nourollah Ahmadi, Wendy M. Vonhof, Christine Fleet, Tim Setter and Susan McCouch
    Citation: Rice 2010 3:9036
  22. The beet armyworm (Spodoptera exigua) and the rice water weevil (Lissorhoptrus oryzophilus) are two important insect pests in rice production. To identify insect-responsive genes in rice, we performed a deep tran...

    Authors: R. C. Venu, M. Sheshu Madhav, M. V. Sreerekha, Kan Nobuta, Yuan Zhang, Peter Carswell, Michael J. Boehm, Blake C. Meyers, Kenneth L. Korth and Guo-Liang Wang
    Citation: Rice 2010 3:9037
  23. Diseases caused by fungal and bacterial pathogens like Magnaporthe oryzae and Xanthomonas oryzae pv. oryzae are responsible for considerable yield loss. Up to now, in rice, the modification of the expression of m...

    Authors: Amandine Delteil, Jie Zhang, Philippe Lessard and Jean-Benoit Morel
    Citation: Rice 2010 3:9035
  24. Australian Oryza are an understudied and underexploited genetic resource for rice improvement. Four species are indigenous: Oryza rufipogon, Oryza meridionalis, Oryza australiensis are widespread across northern ...

    Authors: Robert J. Henry, Nicole Rice, Daniel L. E. Waters, Shabana Kasem, Ryuji Ishikawa, Yin Hao, Sally Dillon, Darren Crayn, Rod Wing and Duncan Vaughan
    Citation: Rice 2009 3:9034
  25. A secreted cellulase of Xanthomonas oryzae pv. oryzae induces innate immune responses in rice including a hypersensitive response (HR) like reaction. Microarray analysis was conducted using RNA isolated 12 h foll...

    Authors: Gopaljee Jha, Hitendra Kumar Patel, Madhumita Dasgupta, Ramesh Palaparthi and Ramesh V. Sonti
    Citation: Rice 2009 3:9033
  26. Transcriptional profiling has identified genes associated with adaptive responses to phosphorus (P) deficiency; however, distinguishing stress response from tolerance has been difficult. We report gene express...

    Authors: Juan Pariasca-Tanaka, Kouji Satoh, Terry Rose, Ramil Mauleon and Matthias Wissuwa
    Citation: Rice 2009 2:9032
  27. In humans, iron (Fe) and zinc (Zn) deficiencies result in major worldwide health problems. Transgenic technologies to produce Fe- and Zn-biofortified rice varieties offer a promising potential solution. Nicoti...

    Authors: Hiroshi Masuda, Kanako Usuda, Takanori Kobayashi, Yasuhiro Ishimaru, Yusuke Kakei, Michiko Takahashi, Kyoko Higuchi, Hiromi Nakanishi, Satoshi Mori and Naoko K. Nishizawa
    Citation: Rice 2009 2:9031
  28. During the last 10 years, a large number of quantitative trait loci (QTLs) controlling rice root morphological parameters have been detected in several mapping populations by teams interested in improving drou...

    Authors: Brigitte Courtois, Nourollah Ahmadi, Farkhanda Khowaja, Adam H. Price, Jean-François Rami, Julien Frouin, Chantal Hamelin and Manuel Ruiz
    Citation: Rice 2009 2:9028
  29. To understand the basis of broad-spectrum disease resistance in rice, we isolated a gamma-ray-induced IR64 mutant G978 that showed enhanced resistance to blast and bacterial blight. The resistance is quantitat...

    Authors: Ma. Reina Suzette Madamba, Nobuko Sugiyama, Alicia Bordeos, Ramil Mauleon, Kouji Satoh, Marietta Baraoidan, Shoshi Kikuchi, Ko Shimamoto and Hei Leung
    Citation: Rice 2009 2:9027
  30. Hybrid weakness is a reproductive barrier. In rice, the hybrid weakness caused by two complementary genes––HWC1 and HWC2––has been surveyed extensively. However, their gene products and the molecular mechanism th...

    Authors: Tsutomu Kuboyama, Toshiya Saito, Takashi Matsumoto, Jianzhong Wu, Hiroyuki Kanamori, Satoru Taura, Muneharu Sato, Wataru Marubashi and Katsuyuki Ichitani
    Citation: Rice 2009 2:9026
  31. The genome sequencing of all major food and bioenergy crops is of critical importance in the race to improve crop production to meet the future food and energy security needs of the world. Next generation sequ...

    Authors: Steve Rounsley, Pradeep Reddy Marri, Yeisoo Yu, Ruifeng He, Nick Sisneros, Jose Luis Goicoechea, So Jeong Lee, Angelina Angelova, Dave Kudrna, Meizhong Luo, Jason Affourtit, Brian Desany, James Knight, Faheem Niazi, Michael Egholm and Rod A. Wing
    Citation: Rice 2009 2:9025
  32. Rice oxalate oxidase genes (OXO) may play a role in resistance to Magnaporthe oryzae. Genome analyses showed four tandemly duplicated OXO genes, OsOXO1OsOXO4, which mapped to a blast resistance QTL in chromosome...

    Authors: Maria Gay C. Carrillo, Paul H. Goodwin, Jan E. Leach, Hei Leung and Casiana M. Vera Cruz
    Citation: Rice 2009 2:9024
  33. Alternative splicing creates a diversity of gene products in higher eukaryotes. Twenty-five percent (1,583/6,371) of predicted alternatively spliced transcripts can be detected using the NSF45K rice whole-geno...

    Authors: Ki-Hong Jung, Laura E. Bartley, Peijian Cao, Patrick E. Canlas and Pamela C. Ronald
    Citation: Rice 2008 2:9020
  34. Heading date determines rice’s adaptation to its area and cropping season. We analyzed the molecular evolution of the Hd6 quantitative trait locus for photoperiod sensitivity in a total of 20 cultivated varieties...

    Authors: Hiroko Yamane, Tomoko Ito, Harumi Ishikubo, Masaki Fujisawa, Harumi Yamagata, Kozue Kamiya, Yukiyo Ito, Masao Hamada, Hiroyuki Kanamori, Hiroshi Ikawa, Yuichi Katayose, Jianzhong Wu, Takuji Sasaki and Takashi Matsumoto
    Citation: Rice 2008 2:9019
  35. Plant roots have a large range of functions, including acquisition of water and nutrients, as well as structural support. Dissecting the genetic and molecular mechanisms controlling rice root development is cr...

    Authors: J. Rebouillat, A. Dievart, J. L. Verdeil, J. Escoute, G. Giese, J. C. Breitler, P. Gantet, S. Espeout, E. Guiderdoni and C. Périn
    Citation: Rice 2008 2:9016

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