Alexandrov N, Tai S, Wang W, Mansueto L, Palis K, Fuentes RR, Ulat VJ, Chebotarov D, Zhang G, Li Z, Mauleon R, Hamilton RS, McNally KL (2015) SNP-seek database of SNPs derived from 3000 rice genomes. Nucleic Acids Res 43:D1023–D1027
CAS
PubMed
Google Scholar
Atkinson NJ, Urwin PE (2012) The interaction of plant biotic and abiotic stresses: from genes to the field. J Exp Bot 63:3523–3543
CAS
PubMed
Google Scholar
Barrett JC (2005) Haploview: analysis and visualization of LD and haplotype maps. Bioinformatics 21:263–265
CAS
PubMed
Google Scholar
Berrocal-Lobo M, Molina A (2004) Ethylene response factor 1 mediates Arabidopsis resistance to the soilborne fungus Fusarium oxysporum. Mol Plant-Microbe Interact 17:763–770
CAS
PubMed
Google Scholar
Bonnecarrère V, Borsani O, Díaz P, Capdevielle F, Blanco P, Monza J (2011) Response to photoxidative stress induced by cold in japonica rice is genotype dependent. Plant Sci 180:726–732
PubMed
Google Scholar
Cheng Z, Zhang X, Zhao K, Yao W, Li R, Zhou B, Jiang T (2019) Over-expression of ERF38 gene enhances salt and osmotic tolerance in transgenic poplar. Front Plant Sci 10:1375
PubMed
PubMed Central
Google Scholar
Duan Y, Zhai C, Li H, Li J, Mei W, Gui H, Ni D, Song F, Li L, Zhang W, Yang J (2012) An efficient and high-throughput protocol for agrobacterium-mediated transformation based on phosphomannose isomerase positive selection in japonica rice (Oryza sativa L.). Plant Cell Rep 31:1611–1624
CAS
PubMed
Google Scholar
Dubois M, Skirycz A, Claeys H, Maleux K, Dhondt S, De Bodt S, Vanden Bossche R, De Milde L, Yoshizumi T, Matsui M, Inze D (2013) Ethylene response Factor6 acts as a central regulator of leaf growth under water-limiting conditions in Arabidopsis. Plant Physiol 162:319–332
CAS
PubMed
PubMed Central
Google Scholar
Dubouzet JG, Sakuma Y, Ito Y, Kasuga M, Dubouzet EG, Miura S, Seki M, Shinozaki K, Yamaguchi-Shinozaki K (2003) OsDREB genes in rice, Oryza sativa L., encode transcription activators that function in drought-, high-salt- and cold-responsive gene expression. Plant J 33:751–763
CAS
PubMed
Google Scholar
Feng JX, Liu D, Pan Y, Gong W, Ma LG, Luo JC, Deng XW, Zhu Y (2005) An annotation update via cDNA sequence analysis and comprehensive profiling of developmental, hormonal or environmental responsiveness of the Arabidopsis AP2/EREBP transcription factor gene family. Plant Mol Biol 59:853–868
CAS
PubMed
Google Scholar
Fujimoto SY, Ohta M, Usui A, Shinshi H, Ohme-Takagi M (2000) Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression. Plant Cell 12:393–404
CAS
PubMed
PubMed Central
Google Scholar
Fukao T, Yeung E, Bailey-Serres J (2011) The submergence tolerance regulator SUB1A mediates crosstalk between submergence and drought tolerance in rice. Plant Cell 23:412–427
CAS
PubMed
Google Scholar
Gasch P, Fundinger M, Muller JT, Lee T, Bailey-Serres J, Mustroph A (2016) Redundant ERF-VII transcription factors bind to an evolutionarily conserved cis-motif to regulate hypoxia-responsive gene expression in Arabidopsis. Plant Cell 28:160–180
CAS
PubMed
Google Scholar
Hattori Y, Nagai K, Furukawa S, Song XJ, Kawano R, Sakakibara H, Wu J, Matsumoto T, Yoshimura A, Kitano H, Matsuoka M, Mori H, Ashikari M (2009) The ethylene response factors SNORKEL1 and SNORKEL2 allow rice to adapt to deep water. Nature 460:1026–1030
CAS
PubMed
Google Scholar
Hauser F, Horie T (2010) A conserved primary salt tolerance mechanism mediated by HKT transporters: a mechanism for sodium exclusion and maintenance of high K+/Na+ ratio in leaves during salinity stress. Plant Cell Environ 33(4):552–565
CAS
PubMed
Google Scholar
Huang L, Wang Y, Wang W, Zhao X, Qin Q, Sun F, Hu F, Zhao Y, Li Z, Fu B, Li Z (2018) Characterization of transcription factor gene OsDRAP1 conferring drought tolerance in Rice. Front Plant Sci 9:94
PubMed
PubMed Central
Google Scholar
Jin P, Huang L, Wang D, Wu H, Zhu L, Fu B (2009) Expression profiling of rice AP2/EREBP genes responsive to abiotic stresses. Sci Agric Sin 42:3765–3773
CAS
Google Scholar
Krishnaswamy S, Verma S, Rahman MH, Kav NN (2011) Functional characterization of four APETALA2-family genes (RAP2.6, RAP2.6L, DREB19 and DREB26) in Arabidopsis. Plant Mol Biol 75:107–127
CAS
PubMed
Google Scholar
Li J, Guo X, Zhang M, Wang X, Zhao Y, Yin Z, Zhang Z, Wang Y, Xiong H, Zhang H, Todorovska E, Li Z (2018) OsERF71 confers drought tolerance via modulating ABA signaling and proline biosynthesis. Plant Sci 270:131–139
CAS
PubMed
Google Scholar
Lin H, Zhu M, Yano M, Gao J, Liang Z, Su W, Hu X, Ren Z, Chao D (2004) QTLs for Na+ and K+ uptake of the shoots and roots controlling rice salt tolerance. Theor Appl Genet 108:253–260
CAS
PubMed
Google Scholar
Liu CW, Fukumoto T, Matsumoto T, Gena P, Frascaria D, Kaneko T, Katsuhara M, Zhong S, Sun X, Zhu Y, Iwasaki I, Ding X, Calamita G, Kitagawa Y (2013) Aquaporin OsPIP1;1 promotes rice salt resistance and seed germination. Plant Physiol Biochem 63:151–158
CAS
PubMed
Google Scholar
Liu D, Chen X, Liu J, Ye J, Guo Z (2012b) The rice ERF transcription factor OsERF922 negatively regulates resistance to Magnaporthe oryzae and salt tolerance. J Exp Bot 63:3899–3912
CAS
PubMed
PubMed Central
Google Scholar
Liu P, Sun F, Gao R, Dong H (2012a) RAP2.6L overexpression delays waterlogging induced premature senescence by increasing stomatal closure more than antioxidant enzyme activity. Plant Mol Biol 79:609–622
CAS
PubMed
Google Scholar
Lorenzo O, Piqueras R, Sanchez-Serrano JJ, Solano R (2003) ETHYLENE RESPONSE FACTOR1 integrates signals from ethylene and jasmonate pathways in plant defense. Plant Cell 15:165–178
CAS
PubMed
PubMed Central
Google Scholar
Ma JF, Tamai K, Yamaji N, Mitani N, Konishi S, Katsuhara M, Ishiguro M, Murata Y, Yano M (2006) A silicon transporter in rice. Nature 440:688–691
CAS
PubMed
Google Scholar
Mizoi J, Shinozaki K, Yamaguchi SK (2011) AP2/ERF family transcription factors in plant abiotic stress responses. Biochim Biophys Acta 1819:86–96
PubMed
Google Scholar
Nakano T, Suzuki K, Fujimura T, Shinshi H (2006) Genome-wide analysis of the ERF gene family in Arabidopsis and rice. Plant Physiol 140:411–432
CAS
PubMed
PubMed Central
Google Scholar
Novo-Uzal E, Gutiérrez J, Martínez-Cortés T, Pomar F (2014) Molecular cloning of two novel peroxidases and their response to salt stress and salicylic acid in the living fossil Ginkgo biloba. Ann Bot 114:923–936
CAS
PubMed
PubMed Central
Google Scholar
Okamuro JK, Caster B, Villarroel R, Van Montagu M, Jofuku KD (1997) The AP2 domain of APETALA2 defines a large new family of DNA binding proteins in Arabidopsis. Proc Natl Acad Sci U S A 94:7076–7081
CAS
PubMed
PubMed Central
Google Scholar
Quan R, Hu S, Zhang Z, Zhang H, Zhang Z, Huang R (2010) Overexpression of an ERF transcription factor TSRF1 improves rice drought tolerance. Plant Biotechnol J 8:476–488
CAS
PubMed
Google Scholar
Rashotte AM, Goertzen LR (2010) The CRF domain defines cytokinin response factor proteins in plants. BMC Plant Biol 10:74
PubMed
PubMed Central
Google Scholar
Ren ZH, Gao JP, Li LG, Cai XL, Huang W, Chao DY, Zhu MZ, Wang ZY, Luan S, Lin HX (2005) A rice quantitative trait locus for salt tolerance encodes a sodium transporter. Nat Genet 37(10):1141–1146
CAS
PubMed
Google Scholar
Sakuma Y, Liu Q, Dubouzet JG, Abe H, Shinozaki K, Yamaguchi-Shinozaki K (2002) DNA-binding specificity of the ERF/AP2 domain of Arabidopsis DREBs, transcription factors involved in dehydration- and cold-inducible gene expression. Biochem Biophys Res Commun 290:998–1009
CAS
PubMed
Google Scholar
Sharma R, Sahoo A, Devendran R, Jain M (2014) Over-expression of a rice tau class glutathione s-transferase gene improves tolerance to salinity and oxidative stresses in Arabidopsis. PLoS One 9(3):e92900
PubMed
PubMed Central
Google Scholar
Sharoni AM, Nuruzzaman M, Satoh K, Shimizu T, Kondoh H, Sasaya T, Choi IR, Omura T, Kikuchi S (2011) Gene structures, classification and expression models of the AP2/EREBP transcription factor family in Rice. Plant Cell Physiol 52:344–360
CAS
PubMed
Google Scholar
Shekoofa A, Sinclair TR (2018) Aquaporin activity to improve crop drought tolerance. Cells 7(9):123
Shen Y, Shen L, Shen ZX, Jing W, Ge HL, Zhao JZ, Zhang (2015) The potassium transporter OsHAK21 functions in the maintenance of ion homeostasis and tolerance to salt stress in rice. Plant Cell Environ 38(12):2766–2779
CAS
PubMed
Google Scholar
Singh KB, Foley RC, Onate-Sanchez L (2002) Transcription factors in plant defense and stress responses. Curr Opin Plant Biol 5:430–436
CAS
PubMed
Google Scholar
Sun S, Yu J, Chen F, Zhao T, Fang X, Li Y, Sui S (2008) TINY, a dehydration-responsive element (DRE)-binding proteinlike transcription factor connecting the DRE- and ethylene responsive element-mediated signaling pathways in Arabidopsis. J Biol Chem 283:6261–6271
CAS
PubMed
Google Scholar
Wang L, Feng Z, Wang X, Wang ZX (2010) DEGseq: an r package for identifying differentially expressed genes from RNA-seq data. Bioinformatics 26:136–138
PubMed
Google Scholar
Wang W, Pan Y, Zhao X, Dwivedi D, Zhu L, Ali J, Fu B, Li Z (2011) Drought-induced site-specific DNA methylation and its association with drought tolerance in rice (Oryza sativa L.). J Exp Bot 62:1951–1960
CAS
PubMed
Google Scholar
Welsch R, Maass D, Voegel T, DellaPenna D, Beyer P (2007) Transcription factor RAP2.2 and its interacting partner SINAT2: stable elements in the carotenogenesis of Arabidopsis leaves. Plant Physiol 145:1073–1085
CAS
PubMed
PubMed Central
Google Scholar
Xie Z, Nolan TM, Jiang H, Yin Y (2019) AP2/ERF transcription factor regulatory networks in hormone and abiotic stress responses in Arabidopsis. Front Plant Sci 10:228
PubMed
PubMed Central
Google Scholar
Xu Z, Chen M, Li L, Ma Y (2008) Functions of the ERF transcription factor family in plants. Botany 86:969–977
CAS
Google Scholar
Xu Z, Xia L, Chen M, Cheng X, Zhang R, Li L, Zhao Y, Lu Y, Ni Z, Liu L, Qiu Z, Ma Y (2007) Isolation and molecular characterization of the Triticum aestivum L. ethylene-responsive factor 1 (TaERF1) that increases multiple stress tolerance. Plant Mol Biol 65:719–732
CAS
PubMed
Google Scholar
Yang S, Wang S, Liu X, Yu Y, Yue L, Wang X, Hao D (2009) Four divergent Arabidopsis ethylene-responsive element-binding factor domains bind to a target DNA motif with a universal CG step core recognition and different flanking bases preference. FEBS J 276:7177–7186
CAS
PubMed
Google Scholar
Yang Z, Tian L, Latoszek-Green M, Brown D, Wu K (2005) Arabidopsis ERF4 is a transcriptional repressor capable of modulating ethylene and abscisic acid responses. Plant Mol Biol 58:585–596
CAS
PubMed
Google Scholar
Zang J, Sun Y, Wang Y, Yang J, Li F, Zhou Y, Zhu L, Reyes J, Mohammadhosein F, Xu J, Li Z (2008) Dissection of genetic overlap of salt tolerance QTLs at the seedling and tillering stages using backcross introgression lines in rice. Sci China C Life Sci 51:583–591
PubMed
Google Scholar
Zhang L, Li Z, Quan R, Li G, Wang R, Huang R (2011) An AP2 domain containing gene, ESE1, targeted by the ethylene signaling component EIN3 is important for the salt response in Arabidopsis. Plant Physiol 157:854–865
CAS
PubMed
PubMed Central
Google Scholar
Zhao M, Yin L, Liu Y, Ma J, Zheng J, Lan J, Fu J, Chen M, Xu Z, Ma Y (2019) The ABA-induced soybean ERF transcription factor gene GmERF75 plays a role in enhancing osmotic stress tolerance in Arabidopsis and soybean. BMC Plant Biol 19:506
CAS
PubMed
PubMed Central
Google Scholar
Zhao Y, Wei T, Yin K, Chen Z, Gu H, Qu L, Qin G (2012) Arabidopsis RAP2.2 plays an important role in plant resistance to Botrytis cinerea and ethylene responses. New Phytol 195:450–460
CAS
PubMed
Google Scholar
Zhu J (2002) Salt and drought stress signal transduction in plants. Annu Rev Plant Biol 53:247–273
CAS
PubMed
PubMed Central
Google Scholar
Zhu J (2016) Abiotic stress signaling and response in plants. Cell 167:313–324
CAS
PubMed
PubMed Central
Google Scholar