Agasimani S, Selvakumar G, Joel AJ, Ganesh Ram S (2013) A simple and rapid single kernel screening method to estimate amylose content in rice grains. Phytochem Anal 24:569–573
Article
CAS
PubMed
Google Scholar
Akram R, Fahad S, Masood N, Rasool A, Ijaz M, Ihsan MZ, Maqbool MM, Ahmad S, Hussain S, Ahmed M, Kaleem S (2019) Plant growth and morphological changes in Rice under abiotic stress. In: Advances in Rice research for abiotic stress tolerance, pp 69–85
Chapter
Google Scholar
Amante-Bordeos A, Sitch LA, Nelson R, Dalmacio RD, Oliva NP, Aswidinnoor H, Leung H (1992) Transfer of bacterial blight and blast resistance from the tetraploid wild rice Oryza minuta to cultivated rice, Oryza sativa. Theoret Appl Genet 84:345–354
Article
CAS
Google Scholar
Arunakumari K, Durgarani CV, Satturu V, Sarikonda KR, Chittoor PDR, Vutukuri B, Laha GS, Nelli APK, Gattu S, Jamal M, Prasadbabu A (2016) Marker-assisted pyramiding of genes conferring resistance against bacterial blight and blast diseases into Indian rice variety MTU1010. Rice Sci 23:306–316
Article
Google Scholar
Ashkani S, Rafii MY, Shabanimofrad M, Foroughi M, Azizia P, Akhtar MS, Sahebi M, Harun AR, Nasehi A (2015) Multiplex SSR–PCR approaches for semi-automated genotyping and characterization of loci linked to blast disease resistance genes in rice. C R Biol 338:709–722
Article
PubMed
Google Scholar
Babujee L, Gnanamanickham SS (2000) Molecular tools for characterization of rice blast pathogen (Magnaporthe grisea) population and molecular marker-assisted breeding for disease resistance. Curr Sci 78:248–257
CAS
Google Scholar
Basavaraj SH, Singh VK, Singh A, Singh A, Singh A, Anand D, Yadav S, Ellur RK, Singh D, Krishnan SG, Nagarajan M (2010) Marker-assisted improvement of bacterial blight resistance in parental lines of Pusa RH10, a superfine grain aromatic rice hybrid. Mol Breed 26:293–305
Article
CAS
Google Scholar
Bellard C, Bertelsmeier C, Leadley P, Thuiller W, Courchamp F (2012) Impacts of climate change on the future of biodiversity. Ecol Lett 15:365–377
Article
PubMed
PubMed Central
Google Scholar
Bentur JS, Pasalu IC, Sarma NP, Prasada Rao U, Mishra B (2003) Gall midge resistance in rice. Directorate of Rice Research, Hyderabad, vol 20
Biradar SK, Sundaram RM, Thirumurugan T, Bentur JS, Amudhan S, Shenoy VV, Mishra B, Bennett J, Sarma NP (2004) Identification of flanking SSR markers for a major rice gall midge resistance gene Gm1 and their validation. Theoret Appl Genet 109:1468–1473
Article
CAS
Google Scholar
Busungu C, Taura S, Sakagami JI, Ichitani K (2016) Identification and linkage analysis of a new rice bacterial blight resistance gene from XM14, a mutant line from IR24. Breed Sci 66:636–645
Article
CAS
PubMed
PubMed Central
Google Scholar
Chen S, Lin XH, Xu CG, Zhang Q (2000) Improvement of bacterial blight resistance of ‘Minghui 63’, an elite restorer line of hybrid rice, by molecular marker-assisted selection. Crop Sci 40:239–244
Article
Google Scholar
Choi SY, Heu MM, Lee JO (1979) Varietal resistance to the brown planthopper in Korea. International Rice research institute. In: Brown planthopper: threat to rice production in Asia, Los Baños, pp 219–232
Google Scholar
Chukwu SC, Rafii MY, Ramlee SI, Ismail SI, Oladosu Y, Kolapo K, Musa I, Halidu J, Muhammad II, Ahmed M (2020) Marker-assisted introgression of multiple resistance genes confers broad spectrum resistance against bacterial leaf blight and blast diseases in Putra-1 rice variety. Agron 10:42
Article
CAS
Google Scholar
Das A, Soubam D, Singh PK, Thakur S, Singh NK, Sharma TR (2012) A novel blast resistance gene, Pi54rh cloned from wild species of rice, Oryza rhizomatis confers broad spectrum resistance to Magnaporthe oryzae. Funct Integr Genomic 12:215–228
Article
CAS
Google Scholar
Das G, Rao GJ (2015) Molecular marker assisted gene stacking for biotic and abiotic stress resistance genes in an elite rice cultivar. Front Plant Sci 6:698
PubMed
PubMed Central
Google Scholar
Das G, Rao GJ, Varier M, Prakash A, Prasad D (2018) Improved Tapaswini having four BB resistance genes pyramided with six genes/QTLs, resistance/tolerance to biotic and abiotic stresses in rice. Sci Rep 8:2413
Article
PubMed
PubMed Central
CAS
Google Scholar
Dilla-Ermita CJ, Tandayu E, Juanillas VM, Detras J, Lozada DN, Dwiyanti MS, Cruz CV, Mbanjo EG, Ardales E, Diaz MG, Mendioro M (2017) Genome-wide association analysis tracks bacterial leaf blight resistance loci in rice diverse germplasm. Rice 10:1–7
Article
Google Scholar
Dokku P, Das KM, Rao GJN (2013a) Genetic enhancement of host plant-resistance of the Lalat cultivar of rice against bacterial blight employing marker-assisted selection. Biotechnol Lett 35:1339–1348
Article
CAS
PubMed
Google Scholar
Dokku P, Das KM, Rao GJN (2013b) Pyramiding of four resistance genes of bacterial blight in Tapaswini, an elite rice cultivar, through marker-assisted selection. Euphytica 192:87–96
Article
Google Scholar
Ghimire KH, Quiatchon LA, Vikram P, Swamy BM, Dixit S, Ahmed H, Hernandez JE, Borromeo TH, Kumar A (2012) Identification and mapping of a QTL (qDTY1.1) with a consistent effect on grain yield under drought. Field Crop Res 131:88–96
Article
Google Scholar
Hasan MM, Rafii MY, Ismail MR, Mahmood M, Rahim HA, Alam MA, Ashkani S, Malek MA, Latif MA (2015) Marker-assisted backcrossing: a useful method for rice improvement. Biotechnol Biotechnol Equip 29:237–254
Article
PubMed
PubMed Central
Google Scholar
He C, Xiao Y, Yu J, Li J, Meng Q, Qing X, Xiao G (2019) Pyramiding Xa21, Bph14, and Bph15 genes into the elite restorer line Yuehui9113 increases resistance to bacterial blight and brown planthopper in rice. J Crop Prot 115:31–39
Article
CAS
Google Scholar
Himabindu K, Suneetha K, Sama VSAK, Bentur JS (2010) A new rice gall midge resistance gene in the breeding line CR57-MR1523, mapping with flanking markers and development of NILs. Euphytica 74:179–187
Article
CAS
Google Scholar
Jena KK, Hechanova SL, Verdeprado H, Prahalada GD, Kim SR (2017) Development of 25 near-isogenic lines (NILs) with ten BPH resistance genes in rice (O. sativa L.): production, resistance spectrum, and molecular analysis. Theoret Appl Genet 130:2345–2360
Article
CAS
Google Scholar
Jeung JU, Heu SG, Shin MS, Vera Cruz CM, Jena KK (2006) Dynamics of Xanthomonas oryzae pv. oryzae populations in Korea and their relationship to known bacterial blight resistance genes. Phytopathol 96:867–875
Article
CAS
Google Scholar
Joseph M, Gopalakrishnan S, Sharma RK, Singh VP, Singh AK, Singh NK, Mohapatra T (2004) Combining bacterial blight resistance and basmati quality characteristics by phenotypic and molecular marker-assisted selection in rice. Mol Breed 13:377–387
Article
CAS
Google Scholar
Kalode MB, Viswanathan PR, Seshu DV (1975) Standard test to characterise host plant resistance to Brown Plant hopper in Rice. Indian J Plant Prot 3:204–206
Google Scholar
Kauffman HE (1973) An improved technique for evaluating resistance of rice varieties to Xanthomonas oryzae. Plant Dis Rep 57:537–541
Google Scholar
Khanna A, Sharma V, Ellur RK, Shikari AB, Krishnan SG, Singh UD, Prakash G, Sharma TR, Rathour R, Variar M, Prashanthi SK (2015) Development and evaluation of near-isogenic lines for major blast resistance gene (s) in basmati rice. Theoret Appl Genet 128:1243–1259
Article
CAS
Google Scholar
Khush GS (2005) What it will take to feed 5.0 billion rice consumers in 2030. Plant Mol Biol 59:1–6
Article
CAS
PubMed
Google Scholar
Khush GS, Jena KK (2009) Current status and future prospects for research on blast resistance in rice (Oryza sativa L.). Adv Genet Genomics Control Rice Blast Dis 1:1–10 https://link.springer.com/chapter/10.1007/978-1-4020-9500-9_1
Google Scholar
Kim SR, Yang J, An G, Jena KK (2016) A simple DNA preparation method for high quality polymerase chain reaction in rice. Plant Breed Biotech 4:99–106
Article
Google Scholar
Kottapalli KR, Narasu ML, Jena KK (2010) Effective strategy for pyramiding three bacterial blight resistance genes into fine grain rice cultivar, samba Mahsuri, using sequence tagged site markers. Biotechnol Lett 32:989–996
Article
CAS
PubMed
Google Scholar
Kumar A, Bhandarkar S, Pophlay DJ, Shrivastava MN (2000) A new gene for gall midge resistance in rice accession Jhitpiti, p 34
Google Scholar
Kumar A, Sandhu N, Dixit S, Yadav S, Swamy BPM, Shamsudin NAA (2018) Marker-assisted selection strategy to pyramid two or more QTLs for quantitative trait-grain yield under drought. Rice 11:35
Article
PubMed
PubMed Central
Google Scholar
Kumar VA, Balachiranjeevi CH, Naik SB, Rekha G, Rambabu R, Harika G, Pranathi K, Hajira SK, Anila M, Kousik M, Kale R (2017) Marker-assisted pyramiding of bacterial blight and gall midge resistance genes into RPHR-1005, the restorer line of the popular rice hybrid DRRH-3. Mol Breed 37:86
Article
CAS
Google Scholar
Kumaravadivel N, Uma MD, Saravanan PA, Suresh H (2006) Molecular marker-assisted selection and pyramiding genes for gall midge resistance in rice suitable for Tamil Nadu region In abstracts-2nd IRC:257
Lakshmi PV, Amudhan S, Bindu KH, Cheralu C, Bentur JS (2006) A new biotype of the Asian rice gall midge Orseolia oryzae (Diptera: Cecidomyiidae) characterized from the Warangal population in Andhra Pradesh, India. Int J Trop Insect Sc 26:207–211
Google Scholar
Madhan Mohan K (2011) Molecular characterization of pathogenic variability of Pyricularia grisea (Rice Blast fungus) (Doctoral dissertation, Ph. D. thesis Faculty of Biotechnology, Jawaharlal Nehru Technological University, Hyderabad)
Midha S, Bansal K, Kumar S, Girija AM, Mishra D, Brahma K, Laha GS, Sundaram RM, Sonti RV, Patil PB (2017) Population genomic insights into variation and evolution of Xanthomonas oryzae pv. oryzae. Sci Rep 7:40694
Article
CAS
PubMed
PubMed Central
Google Scholar
Mishra KK, Vikram P, Yadaw RB, Swamy BM, Dixit S, Cruz MTS, Maturan P, Marker S, Kumar A (2013) qDTY12.1: a locus with a consistent effect on grain yield under drought in rice. BMC Genet 14:12
Article
PubMed
PubMed Central
Google Scholar
Mundt CC, Ahmed HU, Finckh MR, Nieva LP, Alfonso RF (1999) Primary disease gradients of bacterial blight of rice. Phytopathol 89:64–67
Article
CAS
Google Scholar
Muthu V, Abbai R, Nallathambi J, Rahman H, Ramasamy S, Kambale R, Thulasinathan T, Ayyenar B, Muthurajan R (2020) Pyramiding QTLs controlling tolerance against drought, salinity, and submergence in rice through marker assisted breeding. PLoS One 15:e0227421
Article
CAS
PubMed
PubMed Central
Google Scholar
Pang Y, Chen K, Wang X, Wang W, Xu J, Ali J, Li Z (2017) Simultaneous improvement and genetic dissection of salt tolerance of rice (O. sativa L.) by designed QTL pyramiding. Front Plant Sci 8:1275
Article
PubMed
PubMed Central
Google Scholar
Pradhan SK, Nayak DK, Mohanty S, Behera L, Barik SR, Pandit E, Lenka S, Anandan A (2015) Pyramiding of three bacterial blight resistance genes for broad-spectrum resistance in Deepwater rice variety, Jalmagna. Rice 8:19
Article
PubMed Central
Google Scholar
Qing D, Dai G, Zhou W, Huang S, Liang H, Gao L, Gao J, Huang J, Zhou M, Chen R, Chen W (2019) Development of molecular marker and introgression of Bph3 into elite rice cultivars by marker-assisted selection. Breed Sci 69:40–46
Article
CAS
PubMed
PubMed Central
Google Scholar
Qu S, Liu G, Zhou B, Bellizzi M, Zeng L, Dai L, Han B, Wang GL (2006) The broad-spectrum blast resistance gene Pi9 encodes a nucleotide-binding site–leucine-rich repeat protein and is a member of a multigene family in rice. Genetics 172:1901–1914
Article
CAS
PubMed
PubMed Central
Google Scholar
Rajpurohit D, Kumar R, Kumar M, Paul P, Awasthi A, Basha PO, Puri A, Jhang T, Singh K, Dhaliwal HS (2011) Pyramiding of two bacterial blight resistance and a semidwarfing gene in type 3 basmati using marker-assisted selection. Euphytica 178:111–126
Article
Google Scholar
Sandhu N, Dixit S, Swamy BP, Raman A, Kumar S, Singh SP, Yadaw RB, Singh ON, Reddy JN, Anandan A, Yadav S (2019) Marker assisted breeding to develop multiple stress tolerant varieties for flood and drought prone areas. Rice 12:8
Article
PubMed
PubMed Central
Google Scholar
SES, IRRI (2002) Standard evaluation system. International Rice Research Institute, Manila, p 21
Google Scholar
SES, IRRI (2013) Standard evaluation system. International Rice Research Institute, Manila, pp 5–45
Google Scholar
Singh S, Sidhu JS, Huang N, Vikal Y, Li Z, Brar DS, Dhaliwal HS, Khush GS (2001) Pyramiding three bacterial blight resistance genes (xa5, xa13 and Xa21) using marker-assisted selection into indica rice cultivar PR106. Theoret Appl Genet 102:1011–1015
Article
CAS
Google Scholar
Singh VK, Singh A, Singh SP, Ellur RK, Choudhary V, Sarkel S, Singh D, Krishnan SG, Nagarajan M, Vinod KK, Singh UD (2012) Incorporation of blast resistance into “PRR78”, an elite basmati rice restorer line, through marker-assisted backcross breeding. Field Crop Res 128:8–16
Article
Google Scholar
Sinha SK, Sarawgi AK, Singh AK (2017) Genetic analysis of blast resistant gene in rice (Oryza sativa L.) cultivars. ORYZA-An Int J Rice 54:148–157
Article
Google Scholar
Sitch LA, Amante AD, Dalmacio RD, Leung H (1989) Oryza minuta, a source of blast and bacterial blight resistance for rice improvement. In: In 2. International symposium on genetic manipulation in crops, El Batan (Mexico), IRRI, 29-31 Aug 1988
Google Scholar
Suh JP, Cho YC, Won YJ, Ahn EK, Baek MK, Kim MK, Kim BK, Jena KK (2015) Development of resistant gene-pyramided Japonica rice for multiple biotic stresses using molecular marker-assisted selection. Plant Breed Biotech 3:333–435
Article
Google Scholar
Sundaram RM, Vishnupriya MR, Biradar SK, Laha GS, Reddy GA, Rani NS, Sarma NP, Sonti RV (2008) Marker assisted introgression of bacterial blight resistance in samba Mahsuri, an elite indica rice variety. Euphytica 160:411–422
Article
Google Scholar
Swathi G, Rani CVD, Md J, Madhav MS, Vanisree S, Anuradha C, Kumar NR, Kumar NAP, Kumari KA, Bhogadhi SC, Ramprasad E (2019) Marker-assisted introgression of the major bacterial blight resistance genes, Xa21 and xa13, and blast resistance gene, Pi54, into the popular rice variety, JGL1798. Mol Breed 39:58
Article
CAS
Google Scholar
Venuprasad R, Dalid CO, Del Valle M, Zhao D, Espiritu M, Cruz MS, Amante M, Kumar A, Atlin GN (2009) Identification and characterization of large-effect quantitative trait loci for grain yield under lowland drought stress in rice using bulk-segregant analysis. Theoret Appl Genet 120:177–190
Article
Google Scholar
Vikram P, Swamy BM, Dixit S, Ahmed HU, Cruz MTS, Singh AK, Kumar A (2011) qDTY1.1, a major QTL for rice grain yield under reproductive-stage drought stress with a consistent effect in multiple elite genetic backgrounds. BMC Genet 12:89
Article
CAS
PubMed
PubMed Central
Google Scholar
Wang H, Gao Y, Mao F, Xiong L, Mou T (2019) Directional upgrading of brown planthopper resistance in an elite rice cultivar by precise introgression of two resistance genes using genomics-based breeding. Plant Sci 288:110211
Article
CAS
PubMed
Google Scholar
Wang Y, Jiang W, Liu H, Zeng Y, Du B, Zhu L, He G, Chen R (2017) Marker assisted pyramiding of Bph6 and Bph9 into elite restorer line 93–11 and development of functional marker for Bph9. Rice 10:51
Article
PubMed
PubMed Central
Google Scholar
Wu Y, Xiao N, Yu L, Pan C, Li Y, Zhang X, Liu G, Dai Z, Pan X, Li A (2015) Combination patterns of major R genes determine the level of resistance to the M. oryzae in rice (Oryza sativa L.). PLoS One 10:0126130
Google Scholar
Yadav S, Sandhu N, Majumder RR, Dixit S, Kumar S, Singh SP, Mandal NP, Das SP, Yadaw RB, Singh VK, Sinha P (2019) Epistatic interactions of major effect drought QTLs with genetic background loci determine grain yield of rice under drought stress. Sci Rep 22:1–3
Google Scholar
Yadaw RB, Dixit S, Raman A, Mishra KK, Vikram P, Swamy BM, Cruz MTS, Maturan PT, Pandey M, Kumar A (2013) A QTL for high grain yield under lowland drought in the background of popular rice variety Sabitri from Nepal. Field Crop Res 144:281–287
Article
Google Scholar
Yasmin S, Hafeez FY, Mirza MS, Rasul M, Arshad HM, Zubair M, Iqbal M (2017) Biocontrol of bacterial leaf blight of rice and profiling of secondary metabolites produced by rhizospheric Pseudomonas aeruginosa BRp3. Front Microbiol 8:1895
Article
PubMed
PubMed Central
Google Scholar
Yeo US, Jin YD, Kim HY, Park NB, Lim SJ, Hwang HG, Kim SC, Shon JK (1998) Linkage between shikimic dehydrogenase isomerase and a brown planthopper (Nilaparvata lugens) resistance gene in a japonica rice Milyang 4. Korean J Breed 30:62–167
Google Scholar
Yugander A, Sundaram RM, Ladhalakshmi D, Hajira SK, Prakasam V, Prasad MS, Madhav MS, Babu VR, Laha GS (2017) Virulence profiling of Xanthomonas oryzae pv. oryzae isolates, causing bacterial blight of rice in India. Eur. J. Plant Pathol 149:171–191
Article
CAS
Google Scholar
Zheng W, Wang Y, Wang L, Ma Z, Zhao J, Wang P, Zhang L, Liu Z, Lu X (2016) Genetic mapping and molecular marker development for Pi65 (t), a novel broad-spectrum resistance gene to rice blast using next-generation sequencing. Theoret Appl Genet 12:1035–1104
Article
CAS
Google Scholar