Pangenome-Wide Association Study and Transcriptome Analysis Reveal a Novel QTL and Candidate Genes Controlling both Panicle and Leaf Blast Resistance in Rice

Wang, Jian; Hu, Haifei; Jiang, Xianya; Zhang, Shaohong; Yang, Wu; Dong, Jingfang; Yang, Tifeng; Ma, Yamei; Zhou, Lian; Chen, Jiansong; Nie, Shuai; Liu, Chuanguang; Ning, Yuese; Zhu, Xiaoyuan; Liu, Bin; Yang, Jianyuan; Zhao, Junliang

doi:10.1186/s12284-024-00707-x

Fig. 2

From: Pangenome-Wide Association Study and Transcriptome Analysis Reveal a Novel QTL and Candidate Genes Controlling both Panicle and Leaf Blast Resistance in Rice

Identification of QTLs for panicle, leaf and seedling blast resistance. A Manhattan plots of the GWAS with panicle blast resistance (PBR) in field. B Manhattan plots of the GWAS with leaf blast resistance (LBR) in field with all accessions. C–I Manhattan plots of the GWAS with seedling blast resistance (LB_ISO11.121, LB_ISO08T19, LB_ISO11.882, LB_ISO11.1093, LB_ISO13.227, LB_ISO14.42, LB_ISO98.288) to a strain ISO11.121, ISO08T19, ISO11.882, ISO11.1093, ISO13.227, ISO14.42, ISO98.288 at seedling stage in green house. J Manhattan plots of the GWAS with leaf blast resistance in field without extremely resistant plants. K–T QQ plot for the GWAS. y-axis: observed -log10(p) and x-axis: expected -log10(p) under the assumption that p follows a uniform [0,1] distribution. The red lines and gray region show the 95% confidence interval for the QQ plot under the null hypothesis of no association between the SNP and the trait

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