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Table 5 The individual ID, name, Original providing country, region and subpopulation group according to (McCouch et al. 2016)

From: Genome-Wide Association Study of Rice Diversity Panel Reveals New QTLs for Tolerance to Water Deficit Under the Egyptian Conditions

GSOR ID†

NSFTV ID††

Name

Original providing country

Region

#Subpopulation group (fastStructure) (McCouch et al. 2016)

301,001

NSFTV_1

Agostano

Italy

West Europe

TEJ

301,012

NSFTV_13

NSF-TV 13

Unknown

Unknown

AUS

301,383

NSFTV_15

Beonjo

Republic of Korea

East Asia

TEJ

301,028

NSFTV_30

Chiem Chanh

Vietnam

Southeast Asia

IND

301,033

NSFTV_35

CO18

India

South Asia

IND

301,057

NSFTV_61

Guan-Yin-Tsan

China

East Asia

IND

301,058

NSFTV_65

Honduras

Honduras

Central America

TRJ

301,061

NSFTV_68

I-Geo-Tze

Taiwan

East Asia

ADMIX

301,072

NSFTV_79

Jouiku 393G

Japan

East Asia

TEJ

301,079

NSFTV_87

Keriting Tingii

Indonesia

Southeast Asia

ADMIX

301,084

NSFTV_92

Kinastano

Philippines

Southeast Asia

TRJ

301,094

NSFTV_102

Leung Pratew

Thailand

Southeast Asia

IND

301,125

NSFTV_134

Romeo

Italy

West Europe

TEJ

301,137

NSFTV_146

Shuang-Chiang

Taiwan

East Asia

IND

301,139

NSFTV_148

Sintane Diofor

Burkina Faso

Africa

IND

301,154

NSFTV_163

Taducan

Philippines

Southeast Asia

IND

301,204

NSFTV_213

WC 3397

Jamaica

Caribbean

TRJ

301,252

NSFTV_262

Halwa Gose Red

Iraq

West Asia

AUS

301,269

NSFTV_279

Kon Suito

Mongolia

East Asia

TEJ

301,347

NSFTV_359

Surjamkuhi

India

South Asia

AUS

301,348

NSFTV_360

PTB 30

India

South Asia

AUS

301,361

NSFTV_376

Breviaristata

Portugal

West Europe

ADMIX

301,364

NSFTV_379

Wanica

Suriname

South America

TRJ

  1. †GSOR: Genetic Stocks-Oryza collection identification number
  2. ††NSFTV: National Science Foundation-"Exploring the Genetic Basis of Transgressive Variation in Rice" project accession identification number
  3. #Subpopulation identified by fastStructure analysis based on 700,000 SNPs [McCouch et al.; Nature Communications (2016)7:10532]
  4. Aus is coded with AUS, indica with IND, temperate japonica with TEJ, tropical japonica with TRJ and admixed with ADMIX