Table 1 List of candidate genes identified in the tropical West African japonica population between the two cA introgression regions
From: Traces of Introgression from cAus into Tropical Japonica Observed in African Upland Rice Varieties
Gene | Name | Description |
|---|---|---|
Os06g0504900 | OsWRKY31 | Similar to WRKY transcription factor 31 |
Os06g0507200 | Prol-17 | Bifunctional inhibitor/plant lipid transfer protein/seed storage domain containing protein |
Os06g0507300 | Os06g0507300 | Similar to GAMYB-binding protein |
Os06g0507400 | Os06g0507400 | Similar to GAMYB-binding protein (Fragment) |
Os06g0507900 | Os06g0507900 | Conserved hypothetical protein |
Os06g0508700 | MetRS | Similar to methionyl-tRNA synthetase-like protein (ISS) |
Os06g0517700 | Os06g0517700 | Similar to cDNA, clone: J075167K24, full insert sequence |
Os06g0523900 | Os06g0523900 | RNA-processing protein, HAT helix domain containing protein |
Os06g0524300 | Os06g0524300 | Protein of unknown function DUF3133 domain containing protein |
Os06g0526100 | OsbHLH054 | Hypothetical conserved gene |
None | None | None |
Os06g0526350 | Os06g0526350 | Hypothetical conserved gene |
Os06g0526400 | OsPYL7 | Similar to AT-rich element binding factor 3 |
Os06g0526466 | OsEnS-89 | Conserved hypothetical protein |
Os06g0526600 | OsABP | DEAD-box helicase ATP-binding protein, Response to abiotic stress (salt, dehydration, ABA, blue and red light |
Os06g0526650 | Os06g0526650 | Non-protein coding transcript |
Os06g0526700 | OsPP2C55 | Probable protein phosphatase 2C 55 |
Os06g0526800 | OsPP2C56 | Probable protein phosphatase 2C 56 |
Os06g0527100 | OsCNGC12 | Similar to Cyclic nucleotide-gated channel A (Fragment) |
Os06g0527201 | Os06g0527201 | Hypothetical gene |
None | None | None |
Os06g0527300 | OsCNGC13 | Similar to cDNA clone:J023078M02, full insert sequence |
Os06g0527500 | Os06g0527500 | Conserved hypothetical protein |
Os06g0527800 | OsPYL/RCAR7 | Similar to Polyketide cyclase |
Os06g0528300 | OsPYL/RCAR8 | Similar to Polyketide cyclase |
Os06g0528600 | OSSPDS2 | Aminopropyl transferase |
Os06g0532500 | FCP2 | Protein with similar CLE domain, Meristem maintenanc |
Os06g0533700 | Os06g0533700 | Hypothetical conserved gene |
Os06g0534200 | Os06g0534200 | Conserved hypothetical protein |
None | None | None |
Os06g0534500 | Os06g0534500 | Zinc finger, RING-type domain containing protein |
None | None | None |
None | None | None |
Os06g0534800 | Os06g0534800 | Zinc finger, RING-type domain containing protein |
None | None | None |
Os06g0534900 | Os06g0534900 | Hypothetical conserved gene |
Os06g0534950 | Os06g0534950 | Similar to zinc finger, C3HC4 type family protein |
None | None | None |
Os06g0547900 | GSK4 | Similar to Shaggy-related protein kinase eta (EC 2.7.1.-) (ASK-eta) (BRASSINOSTEROID-INSENSITIVE 2) (ULTRACURVATA1) |
Os06g0551400 | OsRab11 | Ras-related small GTP-binding protein, Regulation of vesicular trafficking from trans-Golgi network to plasma membrane or vacuole, Jasmonic acid (JA)-mediated defense signalin |
Os06g0553200 | PFL | Similar to Meiosis 5 |
Os06g0556000 | OsAAP12A | Amino acid permease, Transport of amino acid |
Os06g0559400 | Os06g0559400 | Conserved hypothetical protein |
Os06g0561000 | OsMIOX | Myo-inositol oxygenase, Drought stress toleranc |
Os06g0562200 | OsPYL/RCAR9 | Bet v I allergen family protein |
Os06g0633300 | OsPSK | Similar to Phytosulfokines 1 |
Os06g0633500 | Os06g0633500 | Zinc finger, RING/FYVE/PHD-type domain containing protein |
Os06g0637500 | R2R3-MYB | Similar to MYB transcription factor R2R3 type |
Os06g0638000 | Os06g0638000 | Zinc finger, CCCH-type domain containing protein |
Os06g0642900 | Os06g0642900 | Ubiquitin system component Cue domain containing protein |
Os06g0642950 | Os06g0642950 | Non-protein coding transcript |
Os06g0643000 | Os06g0643000 | Phox-like domain containing protein |
Os06g0643050 | Os06g0643050 | Hypothetical protein |
Os06g0643100 | OsPBC1 | Proteasome subunit beta type 3 (EC 3.4.25.1) (20S proteasome alpha subunit C) (20S proteasome subunit beta-3) |
Os06g0643300 | Os06g0643300 | Development protein-like protein |
Os06g0643500 | Os06g0643500 | Similar to ADR11 protein (Fragment) |
Os06g0643600 | MutM | DNA glycosylase/AP lyase domain containing protein |
Os06g0643900 | OsPAP26 | Purple acid phosphatase (EC:3.1.3.2), Regulation of phosphate remobilization, Utilization of organic phosphoru |
Os06g0644200 | OVP1 | Similar to Pyrophosphate-energized vacuolar membrane proton pump (Pyrophosphate-energized inorganic pyrophosphatase) (H + -PPase) (Vacuolar H + -pyrophosphatase) |
Os06g0644800 | OsOS-9 | Glucosidase II beta subunit-like domain containing protein |
Os06g0645700 | OsHAF701 | Similar to HAF1 |
Os06g0649000 | WRKY28 | PAMP (pathogen-associated molecular pattern)-responsive transrepressor, Defense respons |
Os06g0649600 | Os06g0649600 | Non-protein coding transcript |
Os06g0649800 | Sdt97 | Similar to DNA-3-methyladenine glycosylase I |
Os06g0650300 | OsglHAT1 | Histone H4 acetyltransferase, Regulation of grain weight, yield, and plant biomas |
Os06g0652000 | OsRpo | Similar to T3/T7-like RNA polymerase (Fragment) |