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Rice
Fig. 2 | Rice

Fig. 2

From: BSA-Seq and Fine Linkage Mapping for the Identification of a Novel Locus (qPH9) for Mature Plant Height in Rice (Oryza sativa)

Fig. 2

Quantitative trait locus (QTL) analysis of rice plant height at maturity using 4 QTL-seq methods. A Manhattan plot showing the distribution of Δ(SNP-index) on chromosomes. B Manhattan plot showing the distribution of Euclidean distance (ED2) on chromosomes. C Manhattan plot showing the distribution of G-value on chromosomes. D Manhattan plot showing the distribution of log-transformed Fisher’s exact test P-value distribution, –log10(p) on chromosomes. Blue and red lines represent 95 and 99% confidence intervals, respectively, and black lines represent mean values of the 4 algorithms, which were drawn using sliding window analysis. Numbers on the horizontal coordinates represent chromosome numbers

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