Skip to main content

Table 2 Haplotypes of 5 avirulence (Avr) genes in 27 isolates. +: Identical to the respective Avr gene; −: Do not contain the respective Avr gene; LTR: long terminal repeat

From: Prevalence of Ineffective Haplotypes at the Rice Blast Resistance (R) Gene Loci in Chinese Elite Hybrid Rice Varieties Revealed by Sequence-Based Molecular Diagnosis

SEQName of the strainsAvrPikAvrPiiAvrPi9AvrPiz-tAvrPib
Amino acid positionHaplotypeType of mutations and transposonsHaplotypeType of mutations and transposonsHaplotype
46474867
Strain108-T19NPGAAvrPik-E+Inago2 LTR retrotransposon; − 182 bpAvrPiz-t-H31.8 kb pot3 transposon; + 170 bpAvrPib-H2
Strain208-T29H/NP/AG/DAAvrPik-A/D++AvrPiz-t-H11.8 kb pot3 transposon; −125 bpAvrPib-H8
Strain310–157NPGAAvrPik-E+1 SNP[41th amino acid GCG(A) to GTG(V)]AvrPiz-t-H2495 bp pot3 transposon; −71 bpAvrPib-H9
Strain410–402NPGAAvrPik-E++AvrPiz-t-H1+AvrPib-H1
Strain510–431H/NPGAAvrPik-D/E++AvrPiz-t-H1Deletion at positions 37 and 38 bpAvrPib-H4
Strain610–432NPGAAvrPik-E++AvrPiz-t-H1495 bp pot3 transposon; −71 bpAvrPib-H9
Strain710–555H/NPGAAvrPik-D/E++AvrPiz-t-H1Deletion at positions 37 and 38AvrPib-H4
Strain810–649NPGAAvrPik-E++AvrPiz-t-H11.8 kb pot3 transposon; − 274 bpAvrPib-H6
Strain911–13NPGAAvrPik-E++AvrPiz-t-H11.8 kb pot3 transposon; −274 bpAvrPib-H6
Strain1011–121    ++AvrPiz-t-H11.8 kb pot3 transposon; − 274 bpAvrPib-H6
Strain1111–239NPGAAvrPik-E++AvrPiz-t-H1+AvrPib-H1
Strain1211–445H/NPGAAvrPik-D/E+Inago2 LTR retrotransposon; −182 bpAvrPiz-t-H31.8 kb pot3 transposon; −56 bpAvrPib-H5
Strain1311–882NPGAAvrPik-E++AvrPiz-t-H11.8 kb pot3 transposon; − 56 bpAvrPib-H5
Strain1411–909NPGAAvrPik-E++AvrPiz-t-H11.8 kb pot3 transposon; −274 bpAvrPib-H6
Strain1511–1093NPGAAvrPik-E++AvrPiz-t-H11.8 kb pot3 transposon; −274 bpAvrPib-H6
Strain1612–3055H/NPGAAvrPik-D/E+Inago2 LTR retrotransposon; −182 bpAvrPiz-t-H31.8 kb pot3 transposon; −125 bpAvrPib-H8
Strain1712–3057H/NPGAAvrPik-D/E+Inago2 LTR retrotransposon; −182 bpAvrPiz-t-H31.8 kb pot3 transposon; −65 bpAvrPib-H7
Strain1813–123H/NPGAAvrPik-D/E++AvrPiz-t-H1Deletion at positions 37 and 38 bpAvrPib-H4
Strain1913–227H/NPGAAvrPik-D/E+Inago2 LTR retrotransposon; −182 bpAvrPiz-t-H31.8 kb pot3 transposon; −56 bpAvrPib-H5
Strain2013–412H/NPGAAvrPik-D/E+Inago2 LTR retrotransposon; −182 bpAvrPiz-t-H31.8 kb pot3 transposon; −56 bpAvrPib-H5
Strain2113–466H/NPGAAvrPik-D/E+Inago2 LTR retrotransposon; −182 bpAvrPiz-t-H31.8 kb pot3 transposon; −65 bpAvrPib-H7
Strain2213–594    ++AvrPiz-t-H1+AvrPib-H1
Strain2313–710H/NPGAAvrPik-D/E++AvrPiz-t-H1Deletion at positions 37 and 38 bpAvrPib-H4
Strain2493–286NPGAAvrPik-E++AvrPiz-t-H1495 bp pot3 transposon; −71 bpAvrPib-H9
Strain2598–288H/NPGAAvrPik-D/E+++AvrPiz-t-H11.8 kb pot3 transposon; −125 bpAvrPib-H8
Strain26w08–59HPGAAvrPik-D++AvrPiz-t-H1A97TAvrPib-H3
Strain2700–193H/NPGAAvrPik-D/E++AvrPiz-t-H1A97TAvrPib-H3