Table 3 The distribution of detected InDels between both parents Zhefu802 and CMG and between the two extreme bulks
Type | Zhefu802_vs_CMG | S-bulk_vs_R-bulk |
|---|---|---|
Intergenic | 14,431 | 4650 |
Intragenic | 126 | 46 |
Intron | 46,092 | 14,549 |
Upstream | 92,827 | 30,240 |
Downstream | 71,637 | 22,681 |
Utr_5_prime | 5138 | 1906 |
Utr_3_prime | 6685 | 2067 |
Splice_site_acceptor | 123 | 42 |
Splice_site_donor | 163 | 51 |
Splice_site_region | 816 | 261 |
Start_lost | 70 | 26 |
Frame_shift | 8918 | 3219 |
Codon_deletion | 1952 | 719 |
Codon_insertion | 2147 | 829 |
Exon_deleted | 1 | 0 |
Codon_change_plus_codon_insertion | 636 | 251 |
Codon_change_plus_codon_deletion | 1280 | 430 |
Stop_gained | 224 | 86 |
Stop_lost | 74 | 37 |
Other | 0 | 1 |
Total | 253,340 | 82,091 |