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Table 2 Distribution of high quality SNP markers in the rice genome

From: Identification of genes for salt tolerance and yield-related traits in rice plants grown hydroponically and under saline field conditions by genome-wide association study

ChrAll SNPs a10% set bSNPs within genes c
No. of SNPsSpacing
(bp)
No. of SNPsSpacing
(bp)
No. of genesNo. of SNPsSpacing
(bp)
 1404,43910740,44410705468128,891336
 2337,34710733,73510654577105,849339
 3311,50911731,1511169496294,538385
 4298,56911929,8571189375898,508360
 5240,25112524,0261244381273,139409
 6290,33210829,0341073372091,561340
 7275,47210827,5481077348288,151336
 8281,40810128,1411010327890,526314
 9212,31410821,2321078265667,287340
 10248,3509324,835934272477,376299
 11300,3679730,0379653088102,704282
 12255,59410825,5601077280782,874332
 Total3,455,952108345,600107944,3321,101,404339
  1. aAll SNPs with minor allele frequency > 0.05 and missing data rate < 20%; bRandomly sampled set of 10% of the SNPs from the complete SNP dataset; cAll SNPs distributed in 44,332 annotated genes