Genome-wide association mapping of gene loci affecting disease resistance in the rice-Fusarium fujikuroi pathosystem

Rice

Table 2 Candidate QTLs associated with resistance to bakanae disease

QTL	Population	Trait	Chr	QTL region (bp)^a	Genes within region	R^{2 b}
qBK1.4	Indica	Severity index	1	401,383-426,527	5	0.27
qBK1.5	All	Severity index	1	2,254,725-2,329,243	10	0.18
qBK1.6	All	Colonization rate	1	22,088,636-22,248,843	12	0.28
qBK1.7	Indica	Severity index	1	23,631,992-23,640,231	3	0.25
qBK3.2	All	Colonization rate	3	27,480,288-27,635,650	12	0.19
qBK3.2	All	Severity index	3	27,480,288-27,635,650	12	0.22
qBK4.1	All	Colonization rate	4	22,371,038-22,428,157	14	0.33
qBK6.1	All	Severity index	6	3,276,254-3,639,339	49	0.22
qBK6.2	All	Colonization rate	6	4,866,345-5,059,806	29	0.28
qBK6.3	Indica	Severity index	6	25,298,288-25,638,876	19	0.20
qBK8.1	All	Severity index	8	6,142,736-6,239,144	15	0.28
qBK10.1	Indica	Severity index	10	5,678,051-6,024,705	20	0.25
qBK10.2	All	Severity index	10	6,849,663-6,864,693	1	0.21
qBK10.3	Indica	Severity index	10	9,090,969-9,337,961	16	0.26
qBK11.1	All	Severity index	11	22,576,995-22,582,906	1	0.13

^aThe genomic position is based on the MSU7 Nipponbare reference genome
^bR² represents the phenotypic variation explained by the most significant SNP in the QTL