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Table 2 Candidate QTLs associated with resistance to bakanae disease

From: Genome-wide association mapping of gene loci affecting disease resistance in the rice-Fusarium fujikuroi pathosystem

QTLPopulationTraitChrQTL region (bp)aGenes within regionR2 b
qBK1.4IndicaSeverity index1401,383-426,52750.27
qBK1.5AllSeverity index12,254,725-2,329,243100.18
qBK1.6AllColonization rate122,088,636-22,248,843120.28
qBK1.7IndicaSeverity index123,631,992-23,640,23130.25
qBK3.2AllColonization rate327,480,288-27,635,650120.19
AllSeverity index327,480,288-27,635,650120.22
qBK4.1AllColonization rate422,371,038-22,428,157140.33
qBK6.1AllSeverity index63,276,254-3,639,339490.22
qBK6.2AllColonization rate64,866,345-5,059,806290.28
qBK6.3IndicaSeverity index625,298,288-25,638,876190.20
qBK8.1AllSeverity index86,142,736-6,239,144150.28
qBK10.1IndicaSeverity index105,678,051-6,024,705200.25
qBK10.2AllSeverity index106,849,663-6,864,69310.21
qBK10.3IndicaSeverity index109,090,969-9,337,961160.26
qBK11.1AllSeverity index1122,576,995-22,582,90610.13
  1. aThe genomic position is based on the MSU7 Nipponbare reference genome
  2. bR2 represents the phenotypic variation explained by the most significant SNP in the QTL