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Rice
Fig. 8 | Rice

Fig. 8

From: Unraveling the Genetic Elements Involved in Shoot and Root Growth Regulation by Jasmonate in Rice Using a Genome-Wide Association Study

Fig. 8

Haplotype analysis for qRTW3 a Linkage Disequilibrium heatmap in the peak region of association analysis GWAS for qRTW3. Significant SNP indicated as blue star in the photo and the pattern pairwise r2 of the associated SNPs in the QTL indicated with color code. Red color means SNPs are strongly associated to each other and yellow color means no association. The Linkage Disequilibrium heat map was created using the “LDheatmap” package in R. b Effect of allelic combination of 2 main haplotypes of each QTL on the value of interested traits. Number of accessions for each haplotype is indicated as (n). Welch Two Sample t-test was used to assess the differences between two haplotypes.*, **, *** indicated significant difference at p value < 0.05, 0.01 and 0.001 respectively

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