Fig. 3
From: Signatures of differential selection in chloroplast genome between japonica and indica
Population structure and the phylogenetic tree of 412 rice accessions. (a) The Bayesian Inference tree estimated from MrBayes based on all high-quality SNPs. Here we briefly summarize the characteristics of the tree, the complete tree file we put in Additional file 11. Only the posterior probability bigger than 95 are represents in the figure. (b) The combined figure of phylogenetic tree and population structure. Here, the color of the tree is independent of the color of the structure. For population structure, it was conducted by fastStructure using K values from 2 to 7. a: indica type, b: tropical japonica type, c: temperate japonica type, d; wild rice