Fig. 2
From: Signatures of differential selection in chloroplast genome between japonica and indica
The band distribution of variant (SNPs and InDels) across the chloroplast genome. The band position is depicted as the distance of the first variant of SNPs or InDels based on the reference genome of Nipponbare. (a-f) Highlights marked on the circle map displaying the SNPs and InDels positions. (a) The label name of each gene located in the chloroplast genome base on the position of the reference genome. (b) Total variants detected among the 412 accessions. (c) Variants identified in indica subgroup. (d) Variants in temperate japonica type. (e) Variants in the tropical japonica type. (f) Variants in wild rice. The outside distance unit is kb. The number inside the brackets revealed the number of each accession. In case of the space, not all of the genes were illustrated in the Figure