Mapping of genomic regions associated with arsenic toxicity stress in a backcross breeding populations of rice (Oryza sativa L.)

Rice

Table 3 SNPs identified in the QTL regions using tGBS and 3 K RGP

QTLs	Chromosome	No. of SNPs in tGBS	No. of SNPs in 3 K RGP	Polymorphic SNPs	Non-synonymous SNPs	Total no. of genes	Genes with non-synonymous SNPs
qRChlo1	1	4	479	202	63	20	20
qAsR8.1	8	34	2761	757	148	47	27
qAsR8.2	8	65	3070	1110	179	61	42
qAsS2	2	79	11,705	4542	821	382	225
qAsS5.1	5	46	2346	677	108	94	45
qAsS5.2	5	103	2166	976	192	113	67
qAsS6	6	86	6789	1932	357	240	98
qAsS9.1	9	11	6154	2214	309	326	141
qAsS9.2	9	12	297	142	16	26	11
Total		440	35,767	12,552	2193	1309	676