Deciphering Genetics Underlying Stable Anaerobic Germination in Rice: Phenotyping, QTL Identification, and Interaction Analysis

Rice

Table 3 List of QTLs Detected for Anaerobic Germination Potential in the BC₁F_2:3 Population of Kalarata and NSIC Rc222

QTL NAME	CHR	PEAK MARKER	POS (cM)	INT (cM)	LOD	PVE	ADD
Survivability at 14 DAS
Screenhouse conditions
qSUR3–1 _Rc222-SCR-14	3	SWRm_00272	10.0	2–12	4.51	10.55	9.88
qSUR6–1 _Rc222-SCR-14	6	SWRm_00495	135.3	132–136	5.73	13.11	10.30
qSUR7–1 _Rc222-SCR-14	7	SWRm_01153	60.0	52–64	14.10	29.49	20.70
qSUR9-1 _Rc222-SCR-14	9	SWRm_00692	18.1	14–28	3.66	9.03	8.22
Tray-on-table conditions
qSUR3–1 _Rc222-TAB-14	3	SWRm_00276	2.0	0–12	4.15	9.49	9.27
qSUR6–1 _Rc222-TAB-14	6	SWRm_00495	135.3	132–136	5.76	13.19	11.77
qSUR7–1 _Rc222-TAB-14	7	SWRm_01153	60.0	54–64	13.51	28.39	24.52
Survivability at 21 DAS
Screenhouse conditions
qSUR3–1 _Rc222-SCR-21	3	SWRm_00272	10.0	2–12	4.93	11.47	11.16
qSUR6–1 _Rc222-SCR-21	6	SWRm_00495	135.3	132–136	5.81	13.33	10.71
qSUR7–1 _Rc222-SCR-21	7	SWRm_01153	60.0	56–64	13.80	28.99	20.01
Tray-on-table conditions
qSUR3–1 _Rc222-TAB-21	3	SWRm_00272	10.0	4–14	4.51	10.58	12.31
qSUR6–1 _Rc222-TAB-21	6	SWRm_00495	135.3	132–136	5.18	11.96	11.95
qSUR7–1 _Rc222-TAB-21	7	SWRm_01153	60.0	54–64	12.07	25.80	22.11
Control conditions
qGER9-1 _Rc222-CON-21	9	SWRm_00679	50.0	46–60	3.67	8.55	−2.90

q indicates QTL, SCR screenhouse, TAB tray-on-table, POS position, INT position interval, LOD logarithm of odds, PVE percent phenotypic variation explained, ADD additive effects of the peak marker