Skip to main content

Table 3 List of QTLs Detected for Anaerobic Germination Potential in the BC1F2:3 Population of Kalarata and NSIC Rc222

From: Deciphering Genetics Underlying Stable Anaerobic Germination in Rice: Phenotyping, QTL Identification, and Interaction Analysis

QTL NAME CHR PEAK MARKER POS (cM) INT (cM) LOD PVE ADD
Survivability at 14 DAS
Screenhouse conditions
qSUR3–1 Rc222-SCR-14 3 SWRm_00272 10.0 2–12 4.51 10.55 9.88
qSUR6–1 Rc222-SCR-14 6 SWRm_00495 135.3 132–136 5.73 13.11 10.30
qSUR7–1 Rc222-SCR-14 7 SWRm_01153 60.0 52–64 14.10 29.49 20.70
qSUR9-1 Rc222-SCR-14 9 SWRm_00692 18.1 14–28 3.66 9.03 8.22
Tray-on-table conditions
qSUR3–1 Rc222-TAB-14 3 SWRm_00276 2.0 0–12 4.15 9.49 9.27
qSUR6–1 Rc222-TAB-14 6 SWRm_00495 135.3 132–136 5.76 13.19 11.77
qSUR7–1 Rc222-TAB-14 7 SWRm_01153 60.0 54–64 13.51 28.39 24.52
Survivability at 21 DAS
Screenhouse conditions
qSUR3–1 Rc222-SCR-21 3 SWRm_00272 10.0 2–12 4.93 11.47 11.16
qSUR6–1 Rc222-SCR-21 6 SWRm_00495 135.3 132–136 5.81 13.33 10.71
qSUR7–1 Rc222-SCR-21 7 SWRm_01153 60.0 56–64 13.80 28.99 20.01
Tray-on-table conditions
qSUR3–1 Rc222-TAB-21 3 SWRm_00272 10.0 4–14 4.51 10.58 12.31
qSUR6–1 Rc222-TAB-21 6 SWRm_00495 135.3 132–136 5.18 11.96 11.95
qSUR7–1 Rc222-TAB-21 7 SWRm_01153 60.0 54–64 12.07 25.80 22.11
Control conditions
qGER9-1 Rc222-CON-21 9 SWRm_00679 50.0 46–60 3.67 8.55 −2.90
  1. q indicates QTL, SCR screenhouse, TAB tray-on-table, POS position, INT position interval, LOD logarithm of odds, PVE percent phenotypic variation explained, ADD additive effects of the peak marker