Fig. 5
From: Dissection of the Genetic Architecture of Rice Tillering using a Genome-wide Association Study
Sequence analysis of the candidate Os11g15130 gene in the rice accessions with extremely low and high TNs. Tilted number at the top represents the position related to the initiation codon of ‘ATG’; ‘-’ and ‘+’ indicate the upstream and downstream of ‘ATG’, respectively. ‘$1’ indicates a missense mutation from P to S. ‘$2’ indicates a missense mutation from Alanine (A) to Valine (V), while ‘$3’ indicates a frameshift mutation caused by the deletion of ‘AATT’. Arrow shows the direction of Os11g15130; blue rectangles indicate the gene exon regions. The middle panel is the sequence variations among the extremely low and high TN accessions. The sequence identical regions are not shown in the table due to space limitation. “ATGC” indicates the four bases. ‘--’ indicates that the sequences are the same as the reference genome. ‘I1’ represents an insertion of ‘TAACT’. ‘D1’, ‘D2’ and ‘D3’ represent deletions of ‘TGCTAGCTGC’, ‘AC’ and ‘AATT’, respectively. The bottom panel is the LD-decay of the TN variation in the region. The LD values are included in the blocks with different colors