Table 2 QTLs for 11 traits detected in 3 sets of CSSLs in Shenzhen (SZ) and Hangzhou (HZ)
Trait | Site | Populations | QTL | Chromosome | Location (Mb) | LOD | PVE (%)a | Addb | Known QTL/ gene |
|---|---|---|---|---|---|---|---|---|---|
PH | SZ | C | qPH1–1 | chr1 | 30.0–30.5 | 5.0 | 22.8 | −5.32 |  |
PH | SZ | C | qPH1–2 | chr1 | 38.0–38.4 | 6.3 | 26.3 | 5.88 | sd1 |
PH | HZ | C | qPH5–1 | chr5 | 0.8–1.3 | 3.7 | 19.1 | 7.53 |  |
PH | SZ | A | qPH5–2 | chr5 | 18.6–19.1 | 3.8 | 18.0 | −4.42 |  |
PH | SZ | C | qPH9 | chr9 | 12.2–13.7 | 2.9 | 10.7 | −2.93 |  |
PH | SZ | A | qPH11 | chr11 | 3.0–4.1 | 2.5 | 11.4 | −4.88 |  |
FLL | SZ | A | qFLL1–1 | chr1 | 34.9–35.6 | 3.5 | 15.9 | 1.75 |  |
FLL | HZ | C | qFLL1–2 | chr1 | 42.0–43.2 | 2.5 | 16.8 | −6.72 | qfll1(Yan et al. 1999) |
FLL | HZ | B | qFLL2 | chr2 | 27.9–29.3 | 3.4 | 24.8 | 8.75 | qFLL5(Wang et al. 2011) |
FLL | SZ | A | qFLL6 | chr6 | 9.6–10.5 | 3.3 | 14.8 | 3.05 |  |
FLW | SZ | A | qFLW1 | chr1 | 19.4–20.4 | 3.4 | 17.9 | −0.11 |  |
FLW | HZ | B | qFLW4 | chr4 | 31.0–31.7 | 3.3 | 18.7 | −0.21 | LSCHL4 |
FLW | SZ | B | qFLW4 | chr4 | 31.0–31.7 | 4.4 | 19.2 | −0.25 | LSCHL4 |
FLW | SZ | B | qFLW9 | chr9 | 14.5–14.6 | 3.3 | 24.3 | 0.36 |  |
PL | HZ | A | qPL2 | chr2 | 26.5–26.5 | 4.3 | 12.7 | −0.77 |  |
PL | HZ | C | qPL3 | chr3 | 30.0–30.4 | 4.4 | 27.5 | 1.20 | qPL-3(Shen et al. 2009) |
PL | HZ | A | qPL4 | chr4 | 28.3–28.7 | 7.5 | 24.4 | −0.72 | qPL-4-2(Guo and Hong 2010) |
PL | HZ | A | qPL9 | chr9 | 0.0–5.7 | 4.4 | 13.2 | 0.60 |  |
PL | HZ | A | qPL12 | chr12 | 25.8–26.2 | 3.2 | 9.2 | −1.02 |  |
PN | HZ | C | qPN1 | chr1 | 18.8–19.2 | 3.1 | 20.2 | 0.75 |  |
PPB | HZ | B | qPPB2–1 | chr2 | 27.9–29.3 | 7.1 | 44.8 | 2.67 |  |
PPB | SZ | A | qPPB2–2 | chr2 | 28.4–28.7 | 3.0 | 13.5 | 0.56 | qPPB3(Gao et al. 2013) |
PPB | HZ | A | qPPB3–1 | chr3 | 0.9–1.4 | 3.4 | 17.2 | 0.56 |  |
PPB | SZ | C | qPPB3–2 | chr3 | 35.0–36.4 | 3.3 | 20.7 | −0.75 |  |
PPB | SZ | B | qPPB3–3 | chr3 | 33.4–35.6 | 3.4 | 24.5 | −0.88 |  |
PPB | SZ | A | qPPB4 | chr4 | 19.6–20.7 | 2.6 | 11.6 | 0.52 |  |
SPB | SZ | B | qSPB1–1 | chr1 | 0.0–0.5 | 4.0 | 28.7 | −7.95 |  |
SPB | HZ | A | qSPB1–2 | chr1 | 35.1–36.2 | 3.5 | 15.4 | 5.64 | LAX1 |
SPB | SZ | A | qSPB1–2 | chr1 | 35.1–36.2 | 3.7 | 16.3 | 5.90 | LAX1 |
SPB | HZ | C | qSPB4 | chr4 | 22.8–23.4 | 4.0 | 30.5 | 3.57 |  |
SPB | HZ | A | qSPB8 | chr8 | 26.2–27.9 | 3.0 | 13.4 | 3.01 |  |
SPB | HZ | A | qSPB12 | chr12 | 5.7–6.9 | 2.6 | 11.0 | 2.09 |  |
SN | SZ | B | qSN1 | chr1 | 0.0–0.5 | 2.8 | 21.0 | −25.21 |  |
SN | HZ | B | qSN2 | chr2 | 27.9–29.3 | 2.6 | 19.8 | 47.00 | qGW-2b (Wang et al. 2011) |
SN | HZ | A | qSN12 | chr12 | 5.7–6.9 | 2.7 | 14.1 | 6.61 |  |
GL | HZ | A | qGL1–1 | chr1 | 28.5–30.0 | 3.6 | 27.3 | 0.30 |  |
GL | SZ | B | qGL1–2 | chr1 | 28.1–30.0 | 3.5 | 20.1 | 0.26 |  |
GL | HZ | B | qGL1–2 | chr1 | 28.1–30.0 | 3.3 | 19.6 | 0.22 |  |
GL | SZ | A | qGL1–3 | chr1 | 37.7–38.0 | 3.6 | 10.4 | 0.21 |  |
GL | SZ | A | qGL2 | chr2 | 26.5–27.4 | 3.3 | 9.3 | −0.28 |  |
GL | HZ | A | qGL3–1 | chr3 | 15.9–18.2 | 3.5 | 13.6 | 0.14 |  |
GL | SZ | A | qGL3–1 | chr3 | 15.9–18.2 | 4.0 | 16.3 | 0.26 |  |
GL | HZ | C | qGL3–2 | chr3 | 30.0–31.6 | 3.5 | 17.7 | 0.16 |  |
GL | SZ | A | qGL3–3 | chr3 | 31.1–32.5 | 4.3 | 17.8 | −0.32 |  |
GL | SZ | C | qGL5 | chr5 | 18.4–18.9 | 4.8 | 17.5 | 0.31 |  |
GL | HZ | C | qGL6–1 | chr6 | 6.6–7.1 | 3.4 | 17.0 | 0.16 |  |
GL | SZ | C | qGL6–2 | chr6 | 21.1–22.1 | 4.5 | 7.6 | 0.13 | qGL6.2(Bian et al. 2010) |
GL | SZ | C | qGL7 | chr7 | 0.5–2.1 | 4.9 | 8.3 | 0.16 | qGL7(Bian et al. 2010) |
GL | HZ | A | qGL9 | chr9 | 15.4–16.1 | 3.3 | 8.8 | −0.21 | qGL9.1(Bian et al. 2010) |
GL | SZ | A | qGL11 | chr11 | 2.9–5.8 | 3.1 | 8.7 | −0.21 |  |
GL | HZ | A | qGL11 | chr11 | 2.9–5.8 | 4.1 | 29.2 | −0.26 |  |
GL | HZ | A | qGL12 | chr12 | 19.8–20.6 | 5.2 | 14.8 | −0.30 |  |
GW | SZ | C | qGW3 | chr3 | 7.9–8.6 | 3.0 | 11.5 | 0.06 | qGW3(Wang et al. 2011) |
GW | HZ | B | qGW5 | chr5 | 4.2–5.5 | 3.5 | 25.4 | −0.12 | GW5 |
GW | SZ | B | qGW5 | chr5 | 4.2–5.5 | 4.8 | 33.3 | −0.14 | GW5 |
GW | HZ | C | qGW5 | chr5 | 5.3–5.5 | 4.8 | 44.8 | 0.14 | GW5 |
GW | SZ | C | qGW5 | chr5 | 5.3–5.5 | 6.3 | 27.6 | 0.11 | GW5 |
GW | SZ | A | qGW8 | chr8 | 17.0–17.7 | 4.3 | 21.1 | −0.06 |  |
GW | HZ | C | qGW9 | chr9 | 21.4–21.9 | 2.6 | 15.7 | −0.13 |  |
GW | HZ | A | qGW12 | chr12 | 4.5–5.5 | 3.0 | 12.1 | −0.04 |  |
TGW | HZ | A | qTGW1 | chr1 | 28.5–30.0 | 4.0 | 12.0 | 1.40 |  |
TGW | HZ | C | qTGW3–1 | chr3 | 0.0–1.12 | 3.6 | 14.4 | −0.98 |  |
TGW | SZ | C | qTGW3–1 | chr3 | 0.0–1.12 | 4.6 | 23.7 | −1.34 |  |
TGW | SZ | C | qTGW3–2 | chr3 | 7.9–8.6 | 3.2 | 15.8 | 1.06 |  |
TGW | HZ | C | qTGW5 | chr5 | 5.3–5.5 | 4.9 | 20.9 | 1.37 | GW5 |
TGW | HZ | C | qTGW6 | chr6 | 11.7–19.4 | 6.3 | 28.5 | 1.46 |  |
TGW | SZ | A | qTGW8 | chr8 | 8.6–8.7 | 4.4 | 19.2 | −1.21 |  |
TGW | HZ | A | qTGW9 | chr9 | 15.4–16.1 | 6.7 | 22.0 | −2.35 |  |
TGW | SZ | A | qTGW11 | chr11 | 2.9–5.8 | 3.8 | 16.0 | −1.73 | qTGW11.1(Bian et al. 2010) |
TGW | HZ | A | qTGW11 | chr11 | 2.9–5.8 | 5.5 | 17.3 | −1.41 | qTGW11.1 |
TGW | HZ | A | qTGW12 | chr12 | 5.7–6.9 | 3.2 | 9.3 | −1.07 |  |