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Rice
Fig. 5 | Rice

Fig. 5

From: Development of Three Sets of High-Throughput Genotyped Rice Chromosome Segment Substitution Lines and QTL Mapping for Eleven Traits

Fig. 5

Fine mapping of qGL1. a the interval of qGL1 detected in A set CSSLs and B set CSSLs. Different colors represent different genotypes: red, 9311; blue, PA64s; green, Nipponbare. Dashed lines indicate the overlap regions in different CSSLs. b Local Manhattan plot (top) and LD heatmap (bottom) surrounding the peak on chromosome 1. Dashed lines indicate the candidate region for the peak. c variation of grain length between 9311 and 3 CSSLs. HZ and SZ represent Hangzhou and Shenzhen, respectively. Error bars are s.d. * and ** indicate the least significant difference at 0.05 and 0.01 probability level compared with the recurrent parent in SZ or HZ, respectively. d Differential gene expression and annotation. arpkm is short for Reads Per Kilobase per Million mapped reads; binformation refers to its Arabidopsis homologs at The Arabidopsis Information Resource (TAIR)

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