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Table 1 Summary statistics of genetic diversity indicators comparing the Philippine pigmented rice accessions by rice subspecies and between regions of origin

From: Exploring the genetic diversity within traditional Philippine pigmented Rice

  

A

%

Ar ± SD

Ho ± SD

He ± SD

FIS

FIS_Low

FIS_High

Subspecies

Admix

3009

97.95

1.92 ± 0.21

0.3 ± 0.17

0.35 ± 0.14

0.16

−0.20

0.49

Indica

2788

90.76

1.64 ± 0.41

0.02 ± 0.072

0.26 ± 0.19

0.91

0.87

0.94

Japonica

2531

82.39

1.54 ± 0.45

0.01 ± 0.07

0.21 ± 0.97

0.95

0.94

0.95

Regions

NCR

2791

90.85

1.7 ± 0.37

0.06 ± 0.09

0.26 ± 0.18

0.78

0.57

0.95

CAR

3046

99.15

1.86 ± 0.22

0.03 ± 0.07

0.34 ± 0.15

0.90

0.82

0.97

Ilocos Region

3000

97.66

1.75 ± 0.28

0.02 ± 0.07

0.27 ± 0.16

0.91

0.80

0.97

Cagayan Valley

2826

91.99

1.74 ± 0.35

0.03 ± 0.08

0.28 ± 0.17

0.89

0.73

0.98

Central Luzon

3052

99.35

1.84 ± 0.22

0.03 ± 0.07

0.32 ± 0.14

0.92

0.84

0.97

Calabarzon

2993

97.43

1.81 ± 0.26

0.01 ± 0.07

0.31 ± 0.15

0.96

0.95

0.97

MIMAROPA

2995

97.49

1.74 ± 0.29

0.01 ± 0.06

0.27 ± 0.16

0.96

0.94

0.97

Bicol Region

2956

96.22

1.84 ± 0.27

0.05 ± 0.08

0.33 ± 0.15

0.86

0.72

0.96

Visayas

2978

96.94

1.83 ± 0.27

0.04 ± 0.07

0.32 ± 0.15

0.88

0.70

0.98

Mindanao1

3016

98.18

1.79 ± 0.25

0.01 ± 0.07

0.29 ± 0.15

0.95

0.92

0.97

Mindanao2

2994

97.46

1.84 ± 0.26

0.05 ± 0.08

0.32 ± 0.14

0.85

0.66

0.96

Mindanao3

3006

97.85

1.85 ± 0.24

0.01 ± 0.06

0.34 ± 0.14

0.97

0.96

0.98

  1. Total number of alleles observed across SNP marker loci (A). Total observed alleles per locus as a percentage of population sample (%).Mean allele richness (Ar). Observed heterozygosity across loci (Ho). Expected heterozygosity across loci (He). Inbreeding coefficient (FIS) showing the 95% confidence intervals (FIS_Low and FIS_High). SD, standard deviations