Infrastructures of systems biology that facilitate functional genomic study in rice

Rice

Table 8 List of rice gene indexed mutant databases

Database	Types	Number of FSTs	Resource link	Reference	RiceGE	Orygene	Citation/since
RMD	T-DNA	85,315^a	http://rmd.ncpgr.cn/	10.1111/j.1365-313X.2006.03001.x	○ ^b	○ ^b	174/2007
POSTECH-RISD	T-DNA	107,171^a	N/A	10.1046/j.1365-313x.2000.00767.x	○	○	689/2000
TRIM	T-DNA	59,804^a	http://trim.sinica.edu.tw/	10.1007%2Fs11103–006-9093-z	○	○	206/2007
SHIP T-DNA	T-DNA	10,381^a	N/A	10.1038/cr.2009.15	○	○	38/2009
CIRAD	T-DNA	29,263^a	http://oryzatagline.cirad.fr	10.1111/j.1365-313X.2004.02145.x	○	○	137/2004
CSIRO	Ac-Ds	611^a	N/A	10.1111/j.1467-7652.2004.00081.x	○	○	46/2004
EU-OSTID	Ac-Ds	1315^a	http://orygenesdb.cirad.fr	10.1007/s11103-005-8532-6	○	○	71/2005
UCD	Ac-Ds	17,730^a	N/A	10.1111/j.1365-313X.2005.02570.x	○	○	94/2005
NIAS	Tos17	77,740^a	https://tos.nias.affrc.go.jp	10.1105/tpc.012559	○	○	466/2003
GSNU	Ac-Ds	1072^a	N/A	10.1111/j.1365-313X.2004.02116.x	○	○	104/2004
Zhejiang Univ	T-DNA	741^a	http://genomics/zju.edu.cn/ricetdna	10.1046/j.1365-313X.2003.01860.x	○	N/A	226/2004
KitBase	Irradiation	94,252^a	http://kitbase.ucdavis.edu/	10.1105/tpc.17.00154	○	N/A	11/2017
N/A	CRISPR-Cas9	25,604	N/A	10.1016/j.molp.2017.06.006	N/A	N/A	23/2017
N/A	CRISPR-Cas9	91,004	N/A	10.1016/j.molp.2017.06.007	N/A	N/A	19/2017
RiceFOX	Rice cDNA	18,000	http://ricefox.psc.riken.jp/	10.1093/pcp/pcq190	N/A	N/A	60/2010

^aUpdated on 2018 Jan 18 from RiceGE. ^b indicates that relating data is currently working