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Table 2 The differentially expressed transcription factors encoded by the rice genes under the control of PIPs

From: Identification and expression analysis of genes with pathogen-inducible cis-regulatory elements in the promoter regions in Oryza sativa

InterPro annotation

Transcript-ID

Fold changea

adj. P.val/FDRb

Zinc finger

Os01t0123700–00

1.47

1.15E-02

Os01t0960500–01

−1.15

2.59E-02

Os02t0735900–01

1.4

0

Os06t0192800–01

8.98

5.88E-03

Os06t0687200–01

18.2

9.98E-03

Os09t0419500–02

1.25

4.11E-02

Os09t0468800–00

1.4

1.00E-03

Os09t0535500–01

1.13

3.74E-02

Os11t0572500–01

−1.8

3.96E-04

Os03t0786400–01

1.16

1.19E-02

Os03t0838800–00

1.26

3.36E-03

Os10t0162300–01

−27.77

3.87E-03

Os12t0583700–00

1.61

2.77E-02

Os02t0727300–02

−2

0

Os04t0686000–01

1.74

1.48E-02

Os10t0467800–01

−1.13

3.54E-03

Os04t0629100–01

4.28

4.67E-02

Os04t0629100–02

4.28

4.67E-02

Os03t0639600–01

2.5

0

Os08t0159500–01

−6.19

2.52E-02

Os06t0677700–00

−1.91

4.32E-04

Os08t0491700–00

−3.36

1.40E-02

Os09t0385700–01

15.9

0

Os02t0724000–01

17.84

1.85E-03

Os11t0292050–00

1.73

4.55E-02

Os03t0619151–00

−1.77

3.46E-02

Myb/SANT

Os04t0665600–01

−1.19

2.53E-02

Os05t0553400–01

1.99

3.24E-02

Os03t0141100–01

−1.46

1.71E-06

Os04t0463600–01

−1.98

2.87E-02

Os02t0648300–01

1.57

1.97E-02

EIN3

Os03t0324300–02

1.4

0

Os03t0324300–03

1.4

0

Os03t0324300–04

1.4

0

Os03t0324300–06

1.4

0

HLH

Os01t0195801–00

−1.47

4.59E-02

Os02t0795800–00

− 1.16

3.87E-02

Os09t0468700–00

−2.46

4.70E-02

HTH

Os03t0745000–01

−1.24

3.80E-04

Os03t0745000–02

−1.24

3.80E-04

Os09t0526600–03

1.5

0

AP2/ERF

Os02t0747600–01

−1.66

0

Os05t0497200–01

1.47

1.74E-03

bZIP

Os02t0175100–01

1.15

2.50E-02

GRAS

Os07t0567700–03

−1.96

9.36E-03

NAM

Os03t0327100–01

1.68

1.17E-02

TFIID

Os03t0603300–01

1.6

1.00E-03

WRKY

Os05t0567200–00

1.17

4.24E-02

  1. aMinus indicates down-regulation
  2. bThe values in blue are FDR (False Discovery Rate) measured in the RNA-Seq data analysis