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Table 5 Key genes segregating among the NU varieties

From: Comparative whole genome re-sequencing analysis in upland New Rice for Africa: insights into the breeding history and respective genome compositions

Gene abbreviation

Locus

Trait

Reference

Causal origin

Variety with the gene segment

GBSSI

LOC_Os06g04200

Grain amylose content

Kishine et al. (2008)

CG14

NU1, 2, and 5

BADH2

LOC_Os08g32870

Grain fragrance

Asante et al. (2010)

WAB638–1 (outcross)

NU1

RAE1

LOC_Os04g28280

Awnness

Furuta et al. (2015)

CG14

NU2 and 5

OsC1

LOC_Os06g10350

Purple pigment

Chin et al. (2016)

CG14

NU1, 2, and 5

OsSWEET14

LOC_Os11g31190

Bacterial leaf blight susceptibility

Hutin et al. (2015)

CG14

NU1, 2, and 5

OsHKT1;5

LOC_Os01g20160

Salt tolerance

Platten et al. (2013)

WAB56–104

NU3 and NU4