Table 4 Kyoto Encyclopedia of Genes and Genomes pathway analysis of up-regulated differentially expressed genes derived from comparison W + F versus W groups (W + F vs W) and comparison C + F versus C groups (C + F vs C). The four treatments were non-inoculated cultivated rice (C), cultivated rice inoculated with Magnaporthe oryzae (C + F), non-inoculated wild rice (W), and wild rice inoculated with M. oryzae (W + F)
Pathways | Gene ID | Description | W + F vs W Fold-change | q-value | C + F vs C Fold-change | q-value |
|---|---|---|---|---|---|---|
Fatty acid degradation | Os02g0647900 | alcohol dehydrogenase | 5.70 | 0.02 | unchanged | 1.00 |
Os02g0730000 | aldehyde dehydrogenase (NAD+) | 2.46 | < 0.01 | unchanged | 0.19 | |
Os11g0210600 | alcohol dehydrogenase | 9.17 | < 0.01 | unchanged | 0.99 | |
Os12g0168700 | long-chain acyl-CoA synthetase | 2.29 | 0.04 | unchanged | 0.06 | |
Biosynthesis of unsaturated fatty acids | Os03g0290300 | omega-3 fatty acid desaturase (delta-15 desaturase) | 2.41 | < 0.01 | unchanged | 0.77 |
Os07g0416900 | omega-6 fatty acid desaturase (delta-12 desaturase) | 2.54 | < 0.01 | −3.16 | 0.02 | |
Os07g0417200 | omega-6 fatty acid desaturase (delta-12 desaturase) | 2.43 | < 0.01 | −4.12 | < 0.01 | |
Starch and sucrose metabolism | Os01g0311800 | pectinesterase | 4.30 | < 0.01 | −2.98 | < 0.01 |
Os05g0580000 | glucose-1-phosphate adenylyltransferase | 2.11 | < 0.01 | unchanged | 0.08 | |
Os07g0607400 | pectinesterase | 3.50 | < 0.01 | unchanged | 0.02 | |
Os08g0445700 | trehalose 6-phosphate synthase/phosphatase | 2.28 | < 0.01 | unchanged | 0.85 | |
Os09g0298200 | glucose-1-phosphate adenylyltransferase | 2.92 | < 0.01 | unchanged | 0.15 | |
Os09g0504000 | UDP-glucuronate 4-epimerase | 2.49 | < 0.01 | unchanged | 0.75 | |
Diterpenoid biosynthesis | Os01g0757200 | gibberellin 2-oxidase | 4.41 | < 0.01 | unchanged | 0.30 |
Os02g0569900 | ent-cassa-12,15-diene 11-hydroxylase | 3.31 | < 0.01 | unchanged | < 0.01 | |
Os04g0179200 | momilactone-A synthase | 2.25 | < 0.01 |  | < 0.01 | |
Phenylpropanoid biosynthesis | Os01g0963000 | peroxidase | 3.75 | < 0.01 | −2.62 | < 0.01 |
Os02g0467600 | trans-cinnamate 4-monooxygenase | 4.59 | < 0.01 | unchanged | 0.25 | |
Os02g0627100 | phenylalanine ammonia-lyase | 2.51 | < 0.01 | unchanged | 0.04 | |
Os04g0518400 | phenylalanine ammonia-lyase | 4.64 | < 0.01 | −3.02 | < 0.01 | |
Os04g0651000 | peroxidase | 2.76 | < 0.01 | unchanged | < 0.01 | |
Os07g0677100 | peroxidase | 5.04 | < 0.01 | unchanged | 0.03 | |
Os09g0127300 | cinnamoyl-CoA reductase | 2.25 | < 0.01 | 2.172611 | 0.000 | |
Os10g0109600 | peroxidase | 2.03 | < 0.01 | unchanged | 0.401 | |
Os11g0112200 | peroxidase | 6.48 | < 0.01 | unchanged | 0.033 | |
Lignin | Os04g0518400 | phenylalanine ammonia-lyase | 4.64 | < 0.01 | −3.02 | < 0.01 |
Os02g0626600 | phenylalanine ammonia-lyase | 2.83 | < 0.01 | unchanged | 0.45 | |
Os02g0627100 | phenylalanine ammonia-lyase | 2.51 | < 0.01 | unchanged | 0.04 | |
Os08g0448000 | 4-coumarate--CoA ligase | 2.55 | < 0.01 | unchanged | 0.96 | |
Os11g0643100 | Tryptamine benzoyltransferase | 7.25 | < 0.01 | unchanged | 0.65 | |
Os04g0229100 | cinnamyl alcohol dehydrogenase (CAD6) | 2.01 | < 0.01 | unchanged | < 0.01 | |
Fatty acid elongation | Os03g0245700 | 3-ketoacyl-CoA synthase | unchanged | 0.27 | 3.77 | < 0.01 |
Os04g0483500 | 17beta-estradiol 17-dehydrogenase/very-long-chain 3-oxoacyl-CoA reductase | unchanged | 0.45 | 3.13 | < 0.01 | |
Os05g0574600 | 3-ketoacyl-CoA synthase | unchanged | 0.04 | 3.54 | < 0.01 | |
Os11g0591200 | 3-ketoacyl-CoA synthase | unchanged | 0.76 | 3.27 | < 0.01 | |
Wax and cutin synthesis | Os01g0854800 | fatty acid omega-hydroxylase | unchanged | 0.04 | 2.23 | < 0.01 |
Os02g0666500 | fatty acid omega-hydroxylase | unchanged | 0.41 | 3.86 | < 0.01 | |
Os04g0560100 | fatty acid omega-hydroxylase | unchanged | 0.46 | 2.62 | < 0.01 | |
Os09g0567500 | fatty acyl-CoA reductase | unchanged | 0.87 | 2.57 | 0.048 | |
Peroxisome | Os03g0583800 | protein Mpv17 | 2.18 | < 0.01 | 2.30 | < 0.01 |
Os08g0502700 | alanine-glyoxylate transaminase/serine-glyoxylate transaminase/serine-pyruvate transaminase | 3.148 | < 0.01 | 2.03 | 0.04 | |
Os09g0567500 | fatty acyl-CoA reductase | unchanged | 0.87 | 2.57 | 0.04 | |
Flavone and flavonol biosynthesis | Os10g0320100 | flavonoid 3′-monooxygenase | unchanged | 0.36 | 2.26 | 0.04 |