Table 1 QTL identified for eight peduncle vascular bundle related traits in two years
Traita | QTL | Year | Peak SNP | Alleleb | P | Effectc | R2 (%)d |
|---|---|---|---|---|---|---|---|
LVN | qLVN1 | 2016 | Chr1-13,801,593 | T/A | 7.8E-05 | −0.82 | 2.4 |
qLVN2.1 | 2015 | Chr2–31,993 | A/G | 4.8E-05 | −0.89 | 2.4 | |
qLVN2.2 | 2016 | Chr2–25,871,069 | A/G | 5.5E-05 | 1.64 | 2.5 | |
qLVN2.3 | 2016 | Chr2–29,521,254 | T/C | 8.8E-05 | −1.56 | 2.2 | |
qLVN4 | 2015 | Chr4–5,193,957 | G/A | 8.1E-05 | 0.77 | 2.2 | |
qLVN6 | 2015 | Chr6–28,662,981 | C/T | 9.4E-05 | −0.67 | 2.0 | |
|  | 2016 | Chr6–28,639,502 | G/C | 9.5E-05 | −0.51 | 2.4 | |
qLVN11 | 2016 | Chr11–1,063,214 | C/T | 1.3E-05 | 1.37 | 3.0 | |
LVA | qLVA1 | 2016 | Chr1–2,179,066 | A/G | 4.4E-05 | − 617.1 | 3.8 |
qLVA3 | 2016 | Chr3–33,078,718 | T/C | 8.2E-05 | − 714.3 | 3.5 | |
qLVA4.1 | 2015 | Chr4–31,081,174 | C/A | 9.6E-05 | − 392.1 | 1.4 | |
|  | 2016 | Chr4–31,068,550 | G/C | 4.1E-05 | − 1073.3 | 3.8 | |
qLVA4.2 | 2016 | Chr4–32,189,616 | T/C | 3.8E-05 | − 960.8 | 3.9 | |
qLVA6 | 2015 | Chr6–20,057,366 | C/T | 6.1E-05 | 1362.6 | 3.4 | |
qLVA8 | 2015 | Chr8–3770 | G/A | 6.4E-05 | − 524.4 | 2.5 | |
|  | 2016 | Chr8–69,600 | C/T | 6.4E-05 | − 620.0 | 3.6 | |
qLVA11 | 2015 | Chr11–21,798,323 | T/G | 7.1E-05 | 463.6 | 3.0 | |
|  | 2016 | Chr11–21,798,323 | T/G | 9.0E-05 | 582.6 | 3.4 | |
LVPA | qLVPA1.1 | 2016 | Chr1–1,806,093 | C/A | 6.4E-05 | 252.9 | 3.5 |
qLVPA1.2 | 2016 | Chr1–2,179,066 | A/G | 8.7E-05 | − 175.1 | 3.4 | |
qLVPA2 | 2016 | Chr2–30,012,958 | C/G | 8.0E-05 | − 508.7 | 3.4 | |
qLVPA4.1 | 2015 | Chr4–31,081,174 | C/A | 6.7E-05 | −83.1 | 3.0 | |
|  | 2016 | Chr4–31,068,550 | G/C | 3.0E-05 | − 322.3 | 3.9 | |
qLVPA4.2 | 2016 | Chr4–32,189,616 | T/C | 6.1E-05 | −277.5 | 3.6 | |
qLVPA8.1 | 2016 | Chr8–3770 | G/A | 4.5E-05 | − 219.5 | 3.7 | |
qLVPA8.2 | 2015 | Chr8–2,393,328 | T/A | 3.8E-05 | −524.5 | 3.6 | |
qLVPA8.3 | 2015 | Chr8–27,101,483 | C/T | 9.5E-05 | 220.4 | 3.2 | |
qLVPA8.4 | 2015 | Chr8–27,737,011 | C/T | 2.9E-05 | 187.6 | 3.7 | |
|  | 2016 | Chr8–27,707,779 | C/T | 9.2E-05 | −190.4 | 2.8 | |
qLVPA11 | 2015 | Chr11–25,611,048 | C/A | 3.9E-05 | −360.2 | 3.5 | |
LVXA | qLVXA1 | 2016 | Chr1–2,758,104 | A/G | 5.8E-05 | − 514.4 | 3.7 |
qLVXA5 | 2015 | Chr5–4,823,527 | C/T | 8.4E-05 | − 224.9 | 3.2 | |
|  | 2016 | Chr5–4,823,527 | C/T | 3.4E-05 | − 287.8 | 3.9 | |
qLVXA6 | 2016 | Chr6–21,044,730 | C/A | 5.9E-05 | 415.6 | 3.7 | |
qLVXA8.1 | 2015 | Chr8–87,741 | T/C | 5.4E-05 | 220.6 | 2.8 | |
|  | 2016 | Chr8–69,600 | C/T | 1.4E-06 | − 325.9 | 5.3 | |
qLVXA8.2 | 2015 | Chr8–220,938 | C/T | 3.0E-05 | 195.8 | 2.3 | |
|  | 2016 | Chr8–220,938 | C/T | 2.7E-05 | 282.4 | 4.0 | |
qLVXA8.3 | 2015 | Chr8–27,031,242 | T/A | 8.6E-05 | 439.9 | 3.2 | |
qLVXA11 | 2015 | Chr11–21,798,323 | T/G | 1.6E-05 | 245.6 | 3.9 | |
|  | 2016 | Chr11–21,798,323 | T/G | 2.7E-05 | 222.9 | 2.7 | |
SVN | qSVN1 | 2016 | Chr1–9,724,654 | T/C | 4.3E-05 | −1.76 | 3.6 |
qSVN2 | 2016 | Chr2–25,915,457 | C/A | 5.5E-05 | −1.98 | 3.5 | |
qSVN5.1 | 2015 | Chr5–24,874,414 | A/G | 3.3E-05 | −1.69 | 3.9 | |
|  | 2016 | Chr5–24,874,414 | A/G | 2.7E-06 | −1.77 | 4.7 | |
qSVN5.2 | 2016 | Chr5–25,915,442 | G/A | 5.7E-05 | 1.97 | 3.5 | |
qSVN7 | 2015 | Chr7–29,604,076 | C/T | 4.7E-05 | 1.27 | 2.8 | |
|  | 2016 | Chr7–29,604,076 | C/T | 1.9E-06 | 1.69 | 4.9 | |
SVA | qSVA2.1 | 2015 | Chr2–10,294,412 | G/A | 8.0E-05 | 139.9 | 3.7 |
qSVA2.2 | 2016 | Chr2–11,856,232 | C/A | 3.7E-05 | −342.0 | 3.7 | |
qSVA8.1 | 2016 | Chr8–2,031,279 | C/T | 3.0E-05 | − 258.4 | 3.8 | |
qSVA8.2 | 2016 | Chr8–20,982,368 | G/T | 7.9E-05 | −251.3 | 3.4 | |
qSVA11 | 2015 | Chr11–25,611,048 | C/A | 6.67E-05 | −303.8 | 3.6 | |
qSVA12 | 2016 | Chr12–3,630,490 | C/T | 5.17E-05 | − 234.6 | 3.5 | |
SVPA | qSVPA4.1 | 2016 | Chr4–13,422,276 | C/T | 6.53E-05 | 110.0 | 3.7 |
qSVPA4.2 | 2016 | Chr4–31,878,154 | A/G | 3.56E-05 | 38.7 | 3.9 | |
SVXA | qSVXA2 | 2016 | Chr2–30,012,958 | C/G | 6.4E-05 | −265.8 | 3.5 |
qSVXA8 | 2016 | Chr8–2,031,279 | C/T | 9.74E-05 | − 145.4 | 3.4 | |
qSVXA9 | 2015 | Chr9–16,464,178 | C/T | 1.28E-05 | −149.5 | 4.4 | |
qSVXA11 | 2015 | Chr11–25,611,048 | C/A | 1.13E-05 | −88.2 | 4.5 |