Table 2 Percentage Genome Similarity of The Best qGN4.1 QTL-NILs With Recipient Parent at BC3F2 Generation in the Genetic Background of Twelve Different Mega Varieties of Rice Analysed Using OsSNPnks SNP Genotyping Chip
Sr. no. | Recipient variety | Rice chromosome | Overall similarity | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | |||
1. | PB 1121 | 99.1 | 95.0 | 98.5 | 94.6 | 97.1 | 98.8 | 95.8 | 98.8 | 95.3 | 98.2 | 98.6 | 97.2 | 97.6 |
2. | Samba Mahsuri | 96.6 | 97.0 | 96.1 | 93.1 | 96.7 | 98.0 | 99.6 | 96.0 | 96.9 | 96.7 | 95.0 | 95.7 | 96.5 |
3. | Swarna | 95.5 | 93.4 | 93.3 | 89.6 | 94.4 | 97.1 | 99.4 | 93.9 | 92.2 | 91.5 | 86.1 | 92.1 | 93.8 |
4. | IR 64 | 98.8 | 96.2 | 98.9 | 95.4 | 98.9 | 99.4 | 98.1 | 94.5 | 99.3 | 96.1 | 99.3 | 98.0 | 98.0 |
5. | MTU 1010 | 95.6 | 94.7 | 93.0 | 90.6 | 94.7 | 93.5 | 96.8 | 92.9 | 94.5 | 91.3 | 91.7 | 92.2 | 93.8 |
6. | HUR105 | 91.4 | 96.3 | 97.9 | 93.3 | 97.9 | 92.7 | 98.5 | 98.2 | 97.9 | 97.6 | 97.6 | 97.5 | 96.5 |
7. | Sarjoo 52 | 95.6 | 90.4 | 90.3 | 78.6 | 93.8 | 93.9 | 98.1 | 93.2 | 89.5 | 90.9 | 93.5 | 93.9 | 92.0 |
8. | Pusa 44 | 93.0 | 95.1 | 93.7 | 91.3 | 95.0 | 96.8 | 99.5 | 95.3 | 95.1 | 92.5 | 91.4 | 93.3 | 94.3 |
9. | CSR 30 | 99.6 | 95.9 | 97.8 | 85.8 | 98.5 | 99.6 | 96.9 | 92.6 | 99.6 | 99.4 | 99.3 | 99.2 | 97.4 |
10 | Ranjit | 97.9 | 99.2 | 94.9 | 91.3 | 99.5 | 99.5 | 99.4 | 99.5 | 98.7 | 93.9 | 99.2 | 99.6 | 97.7 |
11 | CR1009 | 94.5 | 99.5 | 97.9 | 90.3 | 99.0 | 94.1 | 99.4 | 89.6 | 92.7 | 98.8 | 99.3 | 94.9 | 96.0 |
12 | PB 1 | 97.2 | 94.2 | 92.1 | 91.5 | 95.3 | 96.3 | 97.1 | 95.2 | 89.2 | 89.2 | 90.1 | 93.3 | 93.4 |
Average | 96.2 | 95.6 | 95.4 | 90.5 | 96.7 | 96.6 | 98.2 | 95.0 | 95.1 | 94.7 | 95.1 | 95.6 | 95.5 | |