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Table 3 Putative cis-elements identified in differentially expressed TF genes

From: Allelic variants of OsSUB1A cause differential expression of transcription factor genes in response to submergence in rice

CATERGORY MOTIF IR64 down (#27 genes) IR64-Sub1 down (#7 genes) IR64-Sub1 up (#13 genes)
Hypoxia & light GT1CONC4:C36SENSUS 26 7 13
ANAERO2CONSENSUS 18 6 8
ANAERO1CONSENSUS 16 5 8
ANAERO3CONSENSUS 9 2 4
ANAERO4CONSENSUS 2 0 1
Energy PYRIMIDINEBOXOSRAMY1A 24 7 10
TATCCAOSAMY 17 4 12
CGACGOSAMY3 16 7 8
TATCCAYMOTIFOSRAMY3D 9 1 8
CAREOSREP1 23 5 7
SITEIIATCYTC 21 5 10
SITEIIBOSPCNA 1 0 0
SITEIIAOSPCNA 0 0 1
SITEIOSPCNA 2 0 2
AACACOREOSGLUB1 13 3 3
PROLAMINBOXOSGLUB1 5 1 5
GCN4OSGLUB1 8 1 0
ACGTOSGLUB1 4 2 3
GARE1OSREP1 4 4 1
GARE2OSREP1 0 3 2
BP5OSWX 3 2 2
Transcription & cell devision BIHD1OS 25 7 12
TATABOXOSPAL 16 4 7
TATABOX1 2 1 0
E2FCONSENSUS 13 1 10
E2F1OSPCNA 2 0 0
LEAFYATAG 3 0 4
WUSATAg 6 0 1
Hormones and stress DRECRTCOREAT 17 6 7
ACGTABREMOTIFA2OSEM 9 4 5
ABREOSRAB21 6 4 2
IRO2OS 3 1 0