Table 3 Putative cis-elements identified in differentially expressed TF genes
CATERGORY | MOTIF | IR64 down (#27 genes) | IR64-Sub1 down (#7 genes) | IR64-Sub1 up (#13 genes) |
|---|---|---|---|---|
Hypoxia & light | GT1CONC4:C36SENSUS | 26 | 7 | 13 |
ANAERO2CONSENSUS | 18 | 6 | 8 | |
ANAERO1CONSENSUS | 16 | 5 | 8 | |
ANAERO3CONSENSUS | 9 | 2 | 4 | |
ANAERO4CONSENSUS | 2 | 0 | 1 | |
Energy | PYRIMIDINEBOXOSRAMY1A | 24 | 7 | 10 |
TATCCAOSAMY | 17 | 4 | 12 | |
CGACGOSAMY3 | 16 | 7 | 8 | |
TATCCAYMOTIFOSRAMY3D | 9 | 1 | 8 | |
CAREOSREP1 | 23 | 5 | 7 | |
SITEIIATCYTC | 21 | 5 | 10 | |
SITEIIBOSPCNA | 1 | 0 | 0 | |
SITEIIAOSPCNA | 0 | 0 | 1 | |
SITEIOSPCNA | 2 | 0 | 2 | |
AACACOREOSGLUB1 | 13 | 3 | 3 | |
PROLAMINBOXOSGLUB1 | 5 | 1 | 5 | |
GCN4OSGLUB1 | 8 | 1 | 0 | |
ACGTOSGLUB1 | 4 | 2 | 3 | |
GARE1OSREP1 | 4 | 4 | 1 | |
GARE2OSREP1 | 0 | 3 | 2 | |
BP5OSWX | 3 | 2 | 2 | |
Transcription & cell devision | BIHD1OS | 25 | 7 | 12 |
TATABOXOSPAL | 16 | 4 | 7 | |
TATABOX1 | 2 | 1 | 0 | |
E2FCONSENSUS | 13 | 1 | 10 | |
E2F1OSPCNA | 2 | 0 | 0 | |
LEAFYATAG | 3 | 0 | 4 | |
WUSATAg | 6 | 0 | 1 | |
Hormones and stress | DRECRTCOREAT | 17 | 6 | 7 |
ACGTABREMOTIFA2OSEM | 9 | 4 | 5 | |
ABREOSRAB21 | 6 | 4 | 2 | |
IRO2OS | 3 | 1 | 0 |