Genome-wide association mapping for root cone angle in rice

Rice

Table 7 Markers significant in the GBS japonica panel excluding the 10 extreme lines with very wide root cone angles

Marker	QTL	Chr	Position1	Position2	Posterior probability	p-value	Number obs. minor allele
S01_39102231	qj01–6	1	39 102 231		0.19	4.75E-04	34
S01_41207248	qj01–7	1	41 207 248	41 304 330	0.30	2.08E-04	17
S01_41249221		1	41 249 221		0.40	1.42E-04	18
S04_31661682	qj04–2	4	31 661 682		0.21	4.56E-04	62
S05_04482655	qj05–5	5	4 482 655		0.31	2.88E-04	29
S11_20481199	qj11–7	11	20 481 199		0.16	4.26E-04	61

In italics, initial probability of the markers only significant through sub-sampling. Position 1-position 2: limits of intervals including significant markers in complete LD