Table 1 Number of polymorphic SNPs detected by C6AIR in 18 bi-parental populations commonly used for mapping in rice. On average a 1 Mb region contains around 3–6 SNPs
From: Large-scale deployment of a rice 6 K SNP array for genetics and breeding applications
Parent1 | Subgroup - Parent1 | Parent2 | Subgroup - Parent2 | Number of polymorphic markers between the two parents using C6AIR |
|---|---|---|---|---|
DV85 | aus | IR24 | indica | 1760 |
DJ123 | aus | IR64 | indica | 1051 |
N22 | aus | IR64 | indica | 1173 |
N22 | aus | Swarna | indica | 1017 |
Kasalath | aus | Nipponbare | temperate japonica | 1555 |
DJ123 | aus | Nipponbare | temperate japonica | 1506 |
FR13A | aus | M202 | tropical japonica | 1636 |
Khao Hlan On | indica | IR64 | indica | 810 |
93–11 | indica | Nipponbare | temperate japonica | 1742 |
IR64 | indica | Azucena | tropical japonica | 1760 |
Teqing | indica | Lemont | tropical japonica | 1713 |
Minghui 63 | indica | Azucena | tropical japonica | 1578 |
Jasmine85 | indica | Lemont | tropical japonica | 1629 |
IR64 | indica | Jefferson | tropical japonica | 1718 |
Nipponbare | temperate japonica | FR13A | aus | 1627 |
Nipponbare | temperate japonica | IR64 | indica | 1982 |
Geumobyeo | temperate japonica | Moroberekan | tropical japonica | 866 |
Kinandang Patong | tropical japonica | IR64 | indica | 1889 |