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Rice

Table 1 List of accessions in the Rice Germplasm Collection assembled for this work

From: Identification of bakanae disease resistance loci in japonica rice through genome wide association study

Accession Name

Sub-population

Origin

I*

S1_628091

S4_31750955

Structure group

GREPPI

Tropical Japonica

Italy

13.2

A

C

adm

L205

Tropical Japonica

USA

16.5

A

C

2

ARSENAL

Tropical Japonica

Italy

17.9

A

C

adm

IAC32 52

Tropical Japonica

Brazil

18.4

A

C

2

ADAIR

Tropical Japonica

USA

19.1

A

C

2

KING

Tropical Japonica

Italy

22.8

A

C

2

MAIORAL

Temperate Japonica

Portugal

23.0

A

C

adm

GRALDO

Tropical Japonica

Italy

24.0

T

C

adm

BENGAL

Temperate Japonica

USA

25.2

A

C

adm

ALAN

Tropical Japonica

USA

25.7

A

C

2

MAYBELLE

Tropical Japonica

USA

26.0

A

C

2

A201

Tropical Japonica

USA

26.8

A

C

2

ITALPATNA x MILYANG

Temperate Japonica

Portugal

28.9

T

C

adm

FLIPPER

Temperate Japonica

Italy

29.5

T

C

1

DELLROSE

Tropical Japonica

USA

29.7

A

C

2

ERCOLE

Temperate Japonica

Italy

29.9

T

C

1

AUGUSTO

Temperate Japonica

Italy

30.0

T

C

1

DUCATO

Temperate Japonica

Italy

30.1

T

C

1

LUXOR

Temperate Japonica

Italy

30.1

T

C

1

CARRICO

Temperate Japonica

Portugal

30.6

T

C

1

HARRA

Temperate Japonica

Australia

30.6

T

C

1

LAGRUE

Tropical Japonica

USA

31.2

A

-

2

LORD

Temperate Japonica

Italy

31.4

T

C

1

LIDO

Temperate Japonica

Italy

31.4

T

C

1

HAREM

Temperate Japonica

Portugal

31.6

T

C

1

CASTELMOCHI

Temperate Japonica

Italy

32.6

T

C

1

GZ8367

Temperate Japonica

Egypt

32.7

T

C

1

JUBILIENI

Temperate Japonica

Bulgary

32.8

T

C

1

DELFINO

Temperate Japonica

Italy

34.1

T

C

1

BRAZOS

Tropical Japonica

USA

34.3

T

-

2

VENERE

Temperate Japonica

Italy

34.4

T

C

1

CT36

Temperate Japonica

Colombia

34.6

T

C

1

FRANCES

Temperate Japonica

Spain

34.9

T

C

1

GRITNA

Temperate Japonica

Italy

35.2

T

C

1

CT58

Temperate Japonica

Colombia

35.2

T

C

1

LUNA

Temperate Japonica

USA

35.4

T

C

1

CRESO

Temperate Japonica

Italy

35.5

A

C

1

BARAGGIA

Temperate Japonica

Italy

35.6

T

G

1

COLINA

Temperate Japonica

Spain

35.7

T

C

1

ITALMOCHI

Temperate Japonica

Italy

35.7

T

C

1

GRAAL

Tropical Japonica

France

35.9

T

C

adm

PECOS

Tropical Japonica

USA

36.0

T

G

adm

CIGALON

Temperate Japonica

France

36.2

T

C

1

SALVO

Tropical Japonica

Italy

36.5

T

C

adm

BIANCA

Temperate Japonica

Italy

36.7

T

C

1

LUSITO IRRADIADO

Temperate Japonica

Portugal

36.8

T

C

1

KULON

Temperate Japonica

Russia

36.8

T

C

1

GIGANTE VERCELLI

Temperate Japonica

Italy

36.9

T

G

1

LADY WRIGHT

Tropical Japonica

USA

37.1

T

G

adm

MANTOVA

Temperate Japonica

Italy

37.6

T

C

1

BAHIA

Temperate Japonica

Spain

38.4

T

C

1

ALICE

Temperate Japonica

Italy

38.5

T

C

1

CENTAURO

Temperate Japonica

Italy

38.7

T

C

1

EUROPA

Temperate Japonica

Italy

38.8

T

C

1

ESTRELA

Temperate Japonica

Portugal

38.9

T

C

adm

IBO 400

Temperate Japonica

Portugal

38.9

A

C

1

DIMITRA

Temperate Japonica

Greece

38.9

T

C

1

CLOT

Temperate Japonica

Spain

39.0

T

C

1

L201

Tropical Japonica

USA

39.1

A

-

2

JEFFERSON

Tropical Japonica

USA

39.3

A

G

2

L202

Tropical Japonica

USA

40.0

A

C

2

EUROSE

Temperate Japonica

Italy

40.3

T

C

1

L204

Tropical Japonica

USA

40.5

A

C

2

BALILLA

Temperate Japonica

Italy

40.5

T

C

1

CHIPKA

Temperate Japonica

Bulgary

40.6

T

C

1

LUCERO

Temperate Japonica

Italy

40.7

T

C

1

GIANO

Tropical Japonica

Italy

41.0

T

C

adm

DRAGO

Temperate Japonica

Italy

41.0

T

C

1

CINIA 40

Temperate Japonica

Cile

41.1

T

C

1

SAKHA 103

Temperate Japonica

Egypt

41.1

T

C

1

GARDE SADRI

Temperate Japonica

Turkey

41.7

T

C

1

BELLE PATNA

Tropical Japonica

USA

41.7

A

C

2

LAMONE

Tropical Japonica

Italy

41.8

T

C

2

FAMILIA 181

Temperate Japonica

Portugal

42.0

T

C

1

CORBETTA

Temperate Japonica

Italy

42.1

T

C

1

EUROSIS

Temperate Japonica

Italy

42.3

A

C

adm

ALPE

Temperate Japonica

Italy

42.3

T

C

1

CARIOCA

Tropical Japonica

Italy

42.4

T

C

adm

VIALONE NANO

Temperate Japonica

Italy

42.5

T

G

1

LOMELLINO

Temperate Japonica

Italy

42.7

T

C

1

KORAL

Temperate Japonica

Italy

42.7

T

C

1

SAKHA 102

Temperate Japonica

Egypt

43.3

T

C

1

ERMES

Tropical Japonica

Italy

43.4

T

G

adm

BURMA

Tropical Japonica

Italy

43.4

T

C

adm

CALMOCHI 101

Temperate Japonica

USA

43.5

T

C

1

ANTONI

Temperate Japonica

Bulgary

44.1

T

C

1

GUADIAMAR

Temperate Japonica

Spain

44.2

T

C

1

ARGO

Temperate Japonica

Italy

44.4

T

C

1

CARNISE

Temperate Japonica

Italy

44.5

T

G

1

AMERICANO 1600

Temperate Japonica

Italy

44.9

T

C

1

ARBORIO

Temperate Japonica

Italy

45.1

T

G

1

DIXIEBELLE

Tropical Japonica

USA

45.3

T

C

2

M203

Temperate Japonica

USA

45.6

T

C

1

BALDO

Temperate Japonica

Italy

45.6

T

C

1

ARTEMIDE

Tropical Japonica

Italy

46.0

T

C

adm

BOMBON

Temperate Japonica

Spain

46.1

T

C

1

CARINA

Temperate Japonica

Bulgary

46.4

T

G

1

GANGE

Tropical Japonica

Italy

46.5

T

C

2

ALEXANDROS

Tropical Japonica

Greece

46.7

A

C

2

LACASSINE

Tropical Japonica

USA

46.7

T

C

2

M6

Temperate Japonica

Italy

48.3

T

G

1

MARATELLI

Temperate Japonica

Italy

48.3

T

C

1

FORTUNA

Tropical Japonica

Italy

49.0

T

G

adm

AIACE

Tropical Japonica

Italy

49.5

T

C

2

BAIXET

Temperate Japonica

Spain

49.8

T

C

1

GIZA 177

Temperate Japonica

Egypt

50.3

T

C

1

CRIPTO

Temperate Japonica

Italy

50.7

T

C

1

AGOSTANO

Temperate Japonica

Italy

51.0

T

C

1

CAPATAZ

Temperate Japonica

Spain

51.3

T

C

1

ANSEATICO

Temperate Japonica

Italy

51.3

T

C

adm

BONNI

Temperate Japonica

Italy

51.4

T

C

1

BALZARETTI

Temperate Japonica

Italy

52.2

T

C

1

BERTONE

Temperate Japonica

Italy

52.2

T

C

1

TEXMONT

Tropical Japonica

USA

52.6

T

-

2

KARNAK

Temperate Japonica

Italy

54.3

T

G

1

CARNAROLI

Temperate Japonica

Italy

54.3

T

G

1

AKITAKOMACHI

Temperate Japonica

Japan

54.5

T

C

1

IBO 380–33

Temperate Japonica

Portugal

54.5

T

G

1

BOMBILLA

Temperate Japonica

Spain

54.5

T

-

1

ALLORIO

Temperate Japonica

Italy

54.6

T

C

1

DREW

Tropical Japonica

USA

54.8

T

C

2

M202

Temperate Japonica

USA

55.1

T

C

1

HANDAO 297

Temperate Japonica

China

55.3

T

G

1

ITALPATNA 48

Temperate Japonica

Italy

55.4

T

C

1

GIOVANNI MARCHETTI

Temperate Japonica

Italy

55.7

T

G

1

ARIETE

Temperate Japonica

Italy

56.0

T

C

1

COCODRIE

Tropical Japonica

USA

57.0

T

C

2

HONDURAS

Tropical Japonica

Spain

59.9

T

G

2

CAMPINO

Temperate Japonica

Portugal

60.1

T

C

1

CARMEN

Temperate Japonica

Italy

60.8

T

C

1

ALPHA

Temperate Japonica

Italy

61.2

T

G

1

CALENDAL

Temperate Japonica

France

61.6

T

C

1

M204

Temperate Japonica

USA

62.9

T

C

1

SELENIO

Temperate Japonica

Italy

66.6

T

C

1

A301

Tropical Japonica

USA

68.7

T

C

2

GLADIO

Tropical Japonica

Italy

73.4

T

C

2

ESCARLATE

Temperate Japonica

Portugal

77.0

T

G

1

JACINTO

Tropical Japonica

USA

77.7

T

C

2

  1. Values of the disease scoring (I*) and the allelic status for the peak SNP markers (S1_628091 and S4_31750955) of the two identified bakanae resistance QTL is reported. Structure groups = groups defined by Structure (membership ≥70%)
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