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Table 2 Gene Ontology classification of putative OsSMF1 target genes

From: Genome-wide identification of grain filling genes regulated by the OsSMF1 transcription factor in rice

Accession

Name

Ontology

IRGSP Gene

motif

Description

GCN4

ACGT

ATGA

GO:0045735

nutrient reservoir activity

molecular_function

Os01g0762500

O

  

GluA-1

Os10g0400200

O

  

GluA-2

Os03g0427300

O

O

 

GluA-3

Os02g0268300

O

 

O

GluB-4

Os02g0268100

O

 

O

GluB-5

Os05g0499100

 

O

 

26-kDa globulin (alpha-globulin)

GO:0051171

regulation of nitrogen compound metabolic process

biological_process

Os07g0182000

 

O

 

OsSMF1

Os01g0393100

 

O

 

No apical meristem (NAM) domain-containing protein (ONAC026)

Os05g0404700

 

O

 

Methyl-CpG-binding protein (MBD1)

Os04g0629300

 

O

 

SNF2-related domain-containing protein.

Os05g0415400

O

O

 

No apical meristem (NAM) domain-containing protein (ONAC024)

Os03g0799600

O

  

ES43-like protein

Os04g0437000

O

  

No apical meristem (NAM) domain-containing protein (ONAC79).

Os09g0520400

O

 

O

OsbZIP76

Os02g0252400

  

O

Rice prolamin box-binding factor (RPBF)

Os07g0668600

  

O

CCCH-type Zinc finger protein (OsGZF1)

GO:0006952

defense response

biological_process

Os11g0582400

 

O

 

Endosperm-specific protein (OsEnS146)

Os11g0701100

 

O

 

Xylanase inhibitor protein 2

Os03g0179700

O

  

Protein of unknown function DUF567 family protein

Os02g0268100

O

 

O

GluB-5

Os02g0268300

O

 

O

GluB-4

GO:0051253

negative regulation of RNA metabolic process

biological_process

Os05g0404700

 

O

 

Methyl-CpG-binding protein (MBD1)

Os03g0799600

O

  

ES43-like protein

Os04 g0629300

 

O

 

SNF2-related domain-containing protein