Table 2 SSR markers identified in the vicinity of candidate genes for polymorphism survey between the HTM-N22 and Pusa 1656
Candidate gene | SSR | Position (bp) | Primers (Forward/Reverse) | Polymorphism |
|---|---|---|---|---|
Aceto-lactate synthase (LOC_Os06g51280 at 31049803 in chromosome 6) | RM20765 | 30593302 | CCAGCTCACCTCAGCTTCATCAGC CATCACCATCACCACCACCATGC | monomorphic |
RM20767 | 30593847 | TCGATCGATCCTAGACTCCTTCC GACTCCACGAACAGCAGGTTAGC | polymorphic | |
RM20768 | 30611463 | CAGGGAATAAACAGGAGGAAGAGG CCAACCTCAACCTAGTTAACCTCACC | monomorphic | |
RM20769 | 30653429 | CAGATGCGGAGGATGAAGAGC CTTCCGGAATTTCAACTCAACG | monomorphic | |
RM20771 | 30665825 | CAAACCTGCGTCTCTGTCTCTCTCC GACGAGCACGACCCATCACC | monomorphic | |
RM20773 | 30692412 | TTGCCAATATTCCCTCCAGTGC GTTGTGTTGGGACCTTGATTCG | monomorphic | |
AcetoHydroxy Acid Synthase (LOC_Os02g30630 at 18236025 bp in chromosome 2) | RM 6844 | 18169413 | AGTCCAAGAAAGGCACGAGAGG CTGCATCGAAGAAGAAGAAGAAGC | polymorphic |
RM13263 | 18187191 | AAGATTGCACACTGGTGTTCTCC AGAAGAGCCGGTCTTTGTCTCC | monomorphic | |
RM13264 | 18192480 | ATCTCCATCGTCTCCTTCCTTGG CGTACAGCCATATCCAGCAAACG | monomorphic | |
RM13267 | 18220791 | TGAGGCGACGACCACCTTCG CCAAAGCCGCAGGTTAAGCATCC | monomorphic | |
RM13268 | 18223511 | CCCAAACATCCAATACGACACC GACGAGCCACCACGTTAGTACG | monomorphic | |
RM13269 | 18237768 | GCTTCGGTAATTTGGTTTCGTGATCC GACCACGTGACGTTCCAAGACG | monomorphic | |
AcetoHydroxy Acid Synthase (LOC_Os04g32010 at 19169130 bp in chromosome 4) | RM16844 | 19095807 | CACCGACTGGTTCGTCTACAGG GAGAAGATATGCAGGTGGAACTGG | monomorphic |
RM16850 | 19172772 | TGCTTGTAAGAGAGGTCAAGAGAGG CCCACCATCTCGTAGAGCTAACC | monomorphic | |
RM16867 | 19452211 | GGAACGTAGCTGAAGTCATGAACC ATGAGCCTTGCTTGCTGTAGTCC | monomorphic | |
RM16873 | 19485808 | GCATATGCATGCAGGAATTGACC TGCACTCCAGCATTAAAGAACAGG | monomorphic | |
RM1205 | 19643755 | CAATCACAGAGCAACACGTACCC GCAGAGGCAGCTGAGAAGTATAGC | monomorphic | |
RM1359 | 20041155 | CGACTTGCCAAAGGTCAACG GATTCTACGGGCCACAAGTCC | monomorphic | |
RM3643 | 20128692 | GCTAAGCTAATCTGACCGGATCTACG GATGGGCCGATTAACAAATTCC | monomorphic | |
RM5749 | 20131193 | GCTCGTTTCTCTCGATCACTCG GCAAGGTTGGATCAGTCATTTCG | polymorphic |