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Rice
Fig. 3 | Rice

Fig. 3

From: Genome-wide Association Analysis Tracks Bacterial Leaf Blight Resistance Loci In Rice Diverse Germplasm

Fig. 3

Highly associated SNPs with resistance to Xoo Race 4 (PXO71) and flanking Xa4 gene. a Manhattan plot based on Efficient Mixed-Model Association eXpedited Model (EMMAX) where x-axis shows the SNPs along each chromosome and y-axis is the − log10 (P-value) for the association. Significant SNPs are those beyond the red line having P-value < 1 × 10−5. b LD matrix (r2) and haplotype blocks based on Expectation Maximization (EM) algorithm. c Significant SNPs (S11_27603791 and S11_27603799) overlapping the exon region of LOC_Os11g45620 (rust-resistance protein Lr21), flanking the Xa4 locus

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