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Rice
Fig. 2 | Rice

Fig. 2

From: Genome-wide Association Analysis Tracks Bacterial Leaf Blight Resistance Loci In Rice Diverse Germplasm

Fig. 2

Highly associated SNPs with resistance to Xoo Race 3b (PXO79) and overlapping the xa5 gene. a Manhattan plot based on Efficient Mixed-Model Association eXpedited Model (EMMAX) where x-axis shows the SNPs along each chromosome and y-axis is the − log10 (P-value) for the association. Significant SNPs are those beyond the red line having P-value < 1 × 10−5. b LD (r2) and haplotype blocks based Expectation Maximization (EM) algorithm. c Significant SNP S5_440644 overlapping the region of LOC_Os05g01710, a transcription initiation factor IIA gamma chain

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