Phenotype | QTL | Chra | Position (cM) | Left Marker | Right Marker | QTL Interval Size (bp) | LOD | PVE (%) | Additive Effect | Parental Source of Increasing Allele Effectb | No. of genes in QTL interval |
---|---|---|---|---|---|---|---|---|---|---|---|
Na+ concentration-IM | qNa2.7 | 2 | 48 | S2_7769844 | S2_7939496 | 169,652 | 2.2969 | 5.55 | -66.59 | P | 24 |
 | qNa6.5 | 6 | 34 | S6_5269698 | S6_5533752 | 264,054 | 2.399 | 5.97 | 69.15 | B | 34 |
 | qNa12.18 | 12 | 60 | S12_18687038 | S12_18741493 | 54,455 | 2.2496 | 5.51 | -66.36 | P | 5 |
Na+ concentration-ICIM | qNa2.7 | 2 | 48 | S2_7769844 | S2_7939496 | 169,652 | 2.2969 | 5.55 | -66.59 | P | 24 |
 | qNa6.5 | 6 | 34 | S6_5269698 | S6_5533752 | 264,054 | 2.399 | 5.97 | 69.15 | B | 34 |
 | qNa12.18 | 12 | 60 | S12_18687038 | S12_18741493 | 54,455 | 2.2496 | 5.51 | -66.36 | P | 5 |
K+ concentration-IM | qK1.8 | 1 | 63 | S1_8656025 | S1_8901503 | 245,478 | 5.7933 | 13.65 | -46.34 | P | 33 |
 | qK1.11 | 1 | 71 | S1_11529325 | S1_11581799 | 52,474 | 5.9263 | 13.66 | -45.13 | P | 6 |
 | qK1.38 | 1 | 173 | S1_38794029 | S1_39047133 | 253,104 | 3.5096 | 8.30 | -33.32 | P | 40 |
 | qK5.4 | 5 | 31 | S5_4699921 | S5_5326365 | 626,444 | 2.2496 | 5.51 | -27.00 | P | 86 |
 | qK6.4 | 6 | 31 | S6_4890290 | S6_5269698 | 379,408 | 3.333 | 8.21 | -32.92 | P | 61 |
K+ concentration-ICIM | qK1.11 | 1 | 71 | S1_11529325 | S1_11581799 | 52,474 | 7.7414 | 16.08 | -48.95 | P | 6 |
 | qK1.38 | 1 | 173 | S1_38794029 | S1_39047133 | 253,104 | 5.3793 | 10.71 | -37.86 | P | 40 |
NaK ratio-IM | qNaK1.11 | 1 | 71 | S1_11529325 | S1_11581799 | 52,474 | 4.154 | 9.83 | 0.29 | B | 6 |
 | qNaK6.2 | 6 | 15 | S6_2927160 | S6_2962502 | 35,342 | 3.5777 | 8.46 | 0.26 | B | 7 |
 | qNaK6.5 | 6 | 33 | S6_5269698 | S6_5533752 | 264,054 | 5.1164 | 13.21 | 0.32 | B | 34 |
NaK ratio-ICIM | qNaK1.11 | 1 | 71 | S1_11529325 | S1_11581799 | 52,474 | 2.6375 | 5.66 | 0.22 | B | 6 |
 | qNaK6.5 | 6 | 33 | S6_5269698 | S6_5533752 | 264,054 | 3.7097 | 8.85 | 0.26 | B | 34 |
Salt injury score-IM | qSIS2.8 | 2 | 50 | S2_8730258 | S2_8927908 | 197,650 | 3.5375 | 8.58 | -0.06 | P | 25 |
 | qSIS2.19 | 2 | 81 | S2_19331684 | S2_19454952 | 123,268 | 3.2133 | 7.66 | -0.06 | P | 14 |
 | qSIS2.28 | 2 | 131 | S2_28239596 | S2_28274467 | 34,871 | 2.6449 | 6.37 | -0.05 | P | 8 |
 | qSIS5.03 | 5 | 1 | S5_312457 | S5_329699 | 17,242 | 2.8257 | 6.74 | 0.06 | B | 4 |
 | qSIS5.1a | 5 | 12 | S5_1686924 | S5_1707475 | 20,551 | 2.8266 | 6.76 | 0.06 | B | 5 |
 | qSIS5.24 | 5 | 106 | S5_24057323 | S5_24281632 | 224,309 | 3.1266 | 7.51 | 0.06 | B | 39 |
 | qSIS6.2 | 6 | 15 | S6_2927160 | S6_2962502 | 35,342 | 2.0824 | 5.04 | 0.05 | B | 7 |
 | qSIS6.5 | 6 | 37 | S6_5848568 | S6_5905669 | 57,101 | 3.0401 | 7.23 | 0.06 | B | 11 |
 | qSIS6.7 | 6 | 48 | S6_7646442 | S6_7661883 | 15,441 | 3.1238 | 7.41 | 0.06 | B | 3 |
 | qSIS6.20 | 6 | 90 | S6_20929261 | S6_20929283 | 22 | 3.9605 | 9.44 | 0.07 | B | 1 |
 | qSIS11.2 | 11 | 18 | S11_2838776 | S11_3716306 | 877,530 | 2.664 | 8.36 | 0.06 | B | 136 |
Salt injury score-ICIM | qSIS5.1b | 5 | 11 | S5_1441967 | S5_1454837 | 12,870 | 9.7068 | 13.33 | 0.08 | B | 2 |
 | qSIS6.2b | 6 | 9 | S6_2123411 | S6_2242943 | 119,532 | 3.5933 | 4.46 | 0.05 | B | 23 |
 | qSIS6.21 | 6 | 92 | S6_21253244 | S6_21256132 | 2888 | 6.9204 | 9.11 | 0.07 | B | 1 |
 | qSIS7.14 | 7 | 57 | S7_14598897 | S7_14625841 | 26,944 | 3.6209 | 4.50 | 0.05 | B | 7 |
 | qSIS8.24 | 8 | 93 | S8_24763939 | S8_25110888 | 346,949 | 2.6235 | 3.28 | 0.04 | B | 47 |
 | qSIS9.8 | 9 | 13 | S9_8608506 | S9_9070610 | 462,104 | 7.09 | 9.19 | 0.07 | B | 51 |
 | qSIS11.2 | 11 | 21 | S11_2838776 | S11_3716306 | 877,530 | 2.336 | 3.53 | 0.04 | B | 136 |
Chlorophyll content-IM | qCHL11.1 | 11 | 5 | S11_1086712 | S11_1293020 | 206,308 | 2.1922 | 5.41 | -1.00 | P | 34 |
 | qCHL11.2 | 11 | 14 | S11_2666525 | S11_2724222 | 57,697 | 2.0172 | 4.86 | -0.95 | P | 7 |
Chlorophyll content-ICIM | qCHL2.20 | 2 | 86 | S2_20258450 | S2_20346560 | 88,110 | 3.6938 | 7.44 | 1.18 | B | 7 |
 | qCHL2.30 | 2 | 143 | S2_30353435 | S2_30402468 | 49,033 | 2.3418 | 4.69 | -0.94 | P | 7 |
 | qCHL3.26 | 3 | 136 | S3_26705619 | S3_26709038 | 3419 | 3.2263 | 6.42 | -1.10 | P | 1 |
Shoot length-IM | qSHL1.1 | 1 | 11 | S1_1708228 | S1_1747144 | 38,916 | 2.0367 | 5.03 | -1.42 | P | 7 |
 | qSHL1.7a | 1 | 48 | S1_7259818 | S1_7296346 | 36,528 | 3.9307 | 9.26 | -1.95 | P | 7 |
 | qSHL1.38 | 1 | 168 | S1_38286772 | S1_38611845 | 325,073 | 25.3529 | 48.03 | -4.43 | P | 52 |
 | qSHL3.34 | 3 | 185 | S3_34720589 | S3_35060080 | 339,491 | 2.361 | 5.65 | 1.54 | B | 69 |
 | qSHL5.4 | 5 | 29 | S5_4565557 | S5_4699921 | 134,364 | 2.3239 | 5.64 | -1.52 | P | 23 |
 | qSHL5.6 | 5 | 44 | S5_6356744 | S5_6433933 | 77,189 | 2.0324 | 4.96 | -1.41 | P | 13 |
Shoot length-ICIM | qSHL1.7b | 1 | 50 | S1_7520182 | S1_7569628 | 49,446 | 6.2678 | 5.86 | -1.57 | P | 5 |
 | qSHL1.38 | 1 | 168 | S1_38286772 | S1_38611845 | 325,073 | 36.9075 | 51.64 | -4.59 | P | 52 |
 | qSHL2.18 | 2 | 77 | S2_18806154 | S2_18937362 | 131,208 | 3.0049 | 2.71 | 1.04 | B | 25 |
 | qSHL3.34 | 3 | 185 | S3_34720589 | S3_35060080 | 339,491 | 4.3994 | 3.96 | 1.29 | B | 69 |
 | qSHL5.3 | 5 | 25 | S5_3353753 | S5_3506138 | 152,385 | 7.0797 | 6.79 | -1.66 | P | 21 |
 | qSHL12.25 | 12 | 93 | S12_25709174 | S12_25887173 | 177,999 | 2.246 | 2.05 | 0.91 | B | 30 |
Root length-IM | qRTL1.26 | 1 | 121 | S1_26421289 | S1_26447134 | 25,845 | 2.7346 | 6.52 | 0.32 | B | 6 |
 | qRTL2.24 | 2 | 114 | S2_24961302 | S2_24961342 | 40 | 4.1447 | 9.72 | 0.39 | B | 0 |
 | qRTL2.26 | 2 | 120 | S2_26028043 | S2_26070191 | 42,148 | 4.2053 | 9.91 | 0.39 | B | 9 |
 | qRTL2.33 | 2 | 160 | S2_33573567 | S2_33614297 | 40,730 | 3.9359 | 9.50 | 0.39 | B | 7 |
 | qRTL3.6 | 3 | 36 | S3_6011601 | S3_6027452 | 15,851 | 3.4683 | 8.23 | 0.36 | B | 2 |
 | qRTL3.7 | 3 | 44 | S3_7130220 | S3_7209963 | 79,743 | 4.4685 | 10.70 | 0.41 | B | 15 |
 | qRTL3.10 | 3 | 57 | S3_10116591 | S3_10132745 | 16,154 | 5.0358 | 11.99 | 0.43 | B | 2 |
 | qRTL4.10 | 4 | 24 | S4_10625625 | S4_10726368 | 100,743 | 2.0131 | 4.88 | 0.28 | B | 14 |
 | qRTL8.4 | 8 | 37 | S8_4558562 | S8_4858127 | 299,565 | 2.121 | 5.34 | 0.36 | B | 41 |
 | qRTL8.19 | 8 | 59 | S8_19884635 | S8_19898432 | 13,797 | 3.272 | 7.75 | 0.41 | B | 2 |
 | qRTL8.27 | 8 | 109 | S8_27238050 | S8_27304101 | 66,051 | 2.1036 | 5.13 | -0.28 | P | 9 |
 | qRTL9.14 | 9 | 39 | S9_14960521 | S9_14976723 | 16,202 | 2.6572 | 6.45 | -0.36 | P | 3 |
Root length-ICIM | qRTL1.22 | 1 | 102 | S1_22666852 | S1_22677418 | 10,566 | 2.2657 | 3.54 | 0.23 | B | 2 |
 | qRTL1.26 | 1 | 121 | S1_26421289 | S1_26447134 | 25,845 | 2.1764 | 3.41 | 0.23 | B | 6 |
 | qRTL3.9 | 3 | 56 | S3_9853159 | S3_9891061 | 37,902 | 4.2907 | 7.59 | 0.34 | B | 7 |
Dry weight-IM | qDWT1.21 | 1 | 97 | S1_21707357 | S1_21733437 | 26,080 | 2.3413 | 5.60 | -0.01 | P | 6 |
 | qDWT4.32 | 4 | 126 | S4_32367131 | S4_32367159 | 28 | 2.3915 | 5.73 | -0.01 | P | 1 |
 | qDWT5.2 | 5 | 15 | S5_2116055 | S5_2167880 | 51,825 | 4.6334 | 10.80 | -0.01 | P | 4 |
 | qDWT5.4 | 5 | 29 | S5_4565557 | S5_4699921 | 134,364 | 6.5783 | 15.04 | -0.01 | P | 23 |
 | qDWT5.5 | 5 | 42 | S5_5997340 | S5_6196044 | 198,704 | 6.5368 | 15.47 | -0.01 | P | 32 |
 | qDWT6.13 | 6 | 72 | S6_13046472 | S6_13097774 | 51,302 | 2.0119 | 5.16 | 0.00 | P | 10 |
 | qDWT6.20 | 6 | 90 | S6_20929261 | S6_20929283 | 22 | 3.7538 | 8.95 | -0.01 | P | 1 |
 | qDWT6.23 | 6 | 102 | S6_23812023 | S6_24039384 | 227,361 | 3.7054 | 8.91 | -0.01 | P | 32 |
 | qDWT11.2 | 11 | 10 | S11_2379158 | S11_2402109 | 22,951 | 2.4389 | 6.03 | -0.01 | P | 3 |
Dry weight-ICIM | qDWT1.40 | 1 | 185 | S1_40372283 | S1_40412316 | 40,033 | 2.0722 | 3.13 | 0.00 | P | 6 |
 | qDWT4.32 | 4 | 126 | S4_32367131 | S4_32367159 | 28 | 3.6566 | 5.93 | -0.01 | P | 1 |
 | qDWT5.4 | 5 | 29 | S5_4565557 | S5_4699921 | 134,364 | 7.5727 | 12.98 | -0.01 | P | 23 |
 | qDWT6.06 | 6 | 3 | S6_692773 | S6_782975 | 90,202 | 3.7128 | 6.02 | -0.01 | P | 13 |
 | qDWT6.24 | 6 | 104 | S6_24107596 | S6_24228831 | 121,235 | 4.4604 | 7.46 | -0.01 | P | 19 |
Shoot-root ratio-IM | qSRR1.7 | 1 | 50 | S1_7520182 | S1_7569628 | 49,446 | 3.7944 | 9.09 | -0.38 | P | 5 |
 | qSRR1.29 | 1 | 135 | S1_29561423 | S1_29568978 | 7555 | 3.1151 | 7.42 | -0.33 | P | 2 |
 | qSRR1.36 | 1 | 159 | S1_36158467 | S1_36189206 | 30,739 | 5.8447 | 13.42 | -0.45 | P | 5 |
 | qSRR1.382 | 1 | 170 | S1_38286772 | S1_38611845 | 325,073 | 10.3107 | 23.01 | -0.59 | P | 52 |
 | qSRR2.28 | 2 | 133 | S2_28317911 | S2_28375704 | 57,793 | 4.7052 | 10.96 | -0.41 | P | 7 |
 | qSRR2.31 | 2 | 146 | S2_31037977 | S2_31043939 | 5962 | 3.2045 | 7.62 | -0.34 | P | 1 |
 | qSRR2.33 | 2 | 160 | S2_33573567 | S2_33614297 | 40,730 | 4.1813 | 9.90 | -0.39 | P | 7 |
 | qSRR2.34 | 2 | 168 | S2_34660774 | S2_35085922 | 425,148 | 2.9367 | 7.37 | -0.33 | P | 68 |
 | qSRR3.8 | 3 | 49 | S3_8327882 | S3_8353264 | 25,382 | 2.6453 | 6.32 | -0.31 | P | 6 |
 | qSRR3.10 | 3 | 57 | S3_10116591 | S3_10132745 | 16,154 | 2.6902 | 6.58 | -0.31 | P | 2 |
 | qSRR3.11 | 3 | 70 | S3_11848358 | S3_11865689 | 17,331 | 2.4751 | 5.93 | -0.30 | P | 1 |
 | qSRR4.10 | 4 | 24 | S4_10625625 | S4_10726368 | 100,743 | 2.438 | 5.91 | -0.30 | P | 14 |
 | qSRR8.19 | 8 | 59 | S8_19884635 | S8_19898432 | 13,797 | 2.3793 | 5.70 | -0.35 | P | 2 |
Shoot root ratio-ICIM | qSRR1.7 | 1 | 50 | S1_7520182 | S1_7569628 | 49,446 | 6.9282 | 8.73 | -0.37 | P | 5 |
 | qSRR1.386 | 1 | 171 | S1_38636497 | S1_38768787 | 132,290 | 15.6449 | 22.43 | -0.59 | P | 22 |
 | qSRR2.33 | 2 | 160 | S2_33573567 | S2_33614297 | 40,730 | 8.5304 | 10.92 | -0.41 | P | 7 |
 | qSRR3.9 | 3 | 56 | S3_9853159 | S3_9891061 | 37,902 | 4.3278 | 5.25 | -0.28 | P | 7 |
 | qSRR8.26 | 8 | 107 | S8_26716230 | S8_26744324 | 28,094 | 2.533 | 3.01 | 0.21 | B | 5 |