Transcriptional regulatory mechanism of alcohol dehydrogenase 1-deficient mutant of rice for cell survival under complete submergence

Rice

Table 3 List of transcription factor genes with total enrichment scores among the upregulated (UR) and downregulated (DR) target genes in the rad mutant

TF Family	Locus_ID (Annotation)^a	Fold increase^b	Total enrichment score of target motifs^c
			UR	DR
MYB	Os01g0187900 (Similar to Transcription factor MYBS2)	2.80	587	826
ERF	Os04g0547600 (Pathogenesis-related transcriptional factor and ERF domain containing protein)	6.97	104	60
	Os04g0398000 (Pathogenesis-related transcriptional factor and ERF domain containing protein)	3.86
	Os04g0550200 (Pathogenesis-related transcriptional factor and ERF domain containing protein)	2.81
	Os01g0797600 (AP2/ERF family protein, ERF-associated EAR-motif-containing repressor, Abiotic stress response, Stress signaling, OsERF3)	2.62
WRKY	Os05g0571200 (Similar to WRKY transcription factor 19)	14.59	61	--
	Os01g0826400 (WRKY transcription facto 24)	8.82
	Os01g0584900 (WRKY transcription factor 28-like (WRKY5) (WRKY transcription factor 77)	5.43
	Os02g0181300 (Similar to WRKY transcription factor)	4.60
	Os06g0649000 (Similar to WRKY transcription factor 28)	3.84
	Os03g0758000 (Similar to WRKY transcription protein)	3.83
	Os04g0605100 (WRKY transcription factor 68)	3.11
	Os01g0246700 (Similar to WRKY transcription factor 1)	2.58
bHLH	Os06g0193400 (Similar to Helix-loop-helix protein homolog)	2.57	59	--

^aInformation based on RAP-DB (http://rapdb.dna.affrc.go.jp/); ^bBased on microarray data of Takahashi et al. (2011); ^ctotal target motif enrichment score = sum of the % occurrences of all motif species belonging to the same TF family in the upregulated (UR) and downregulated (DR) groups of genes (refer to Tables 1 and 2)