Table 1 Potential cis-elements identified in the promoters of upregulated genes in rad mutant
Cis-elements | Motifs | Associated TFs | % (TIC), E-value* |
|---|---|---|---|
AT-hook/PE1-like | GAAAAAAAAA | MYB (PF1) | 71 (15.87), 9e-004 |
TATTTTTTA | MYB (PF1) | 58 (14.35), 8e-004 | |
TTTGTTTTT | MYB (PF1) | 52 (13.58), 6e-004 | |
AAAAAAATG | MYB (PF1) | 51 (13.77), 6e-004 | |
GT-element-like | GAAAAAAAAA | MYB (GT-1/GT-3b) | 71 (15.87), 9e-004 |
GTGTGTTT | MYB (GT-1) | 54 (12.50), 7e-004 | |
GARE-like | TTTGTTTTT | MYB (R1, R2R3) | 52 (13.58), 6e-004 |
TTTACAAA | MYB (R1, R2R3) | 56 (12.25), 3e-004 | |
MYB-box-like | AGGTGCACA | MYB (R1, R2R3) | 63 (11.06), 5e-004 |
TCTCCCAC | MYB (R1, R2R3) | 59 (11.66), 3e-003 | |
ABRE-like | AGGTGCACA | bZIP (Gr. A) | 63 (11.06), 5e-004 |
TCCTCGCC | bZIP (Gr. A) | 59 (12.89), 5e-004 | |
As-1-like | AGCATCAA | bZIP (Gr. D, I, S) | 71 (10.87), 3e-004 |
AuxRe-like | TCTCCCAC | ARF | 59 (11.66), 3e-003 |
TTTGTTTTT | ARF | 52 (13.58), 6e-004 | |
MYC-box-like | CCTACTCC | MYC (bHLH) | 56 (11.01), 2e-004 |
CACATCTC | MYC (bHLH) | 54 (11.14), 6e-004 | |
GCC-box-like | CGCCGCCGG | ERF (I, IV, VII, X) | 53 (14.54), 4e-004 |
GCGGCGGC | ERF (I, IV, VII, X) | 51 (14.24), 1e-004 | |
W-box-like | GTGACCAAA | WRKY | 61 (10.68) 8e-004 |
E2F binding site-like | CCCCCGCC | E2F | 59 (12.44), 3e-004 |
PCF1 and PCF2 binding site-like | TCTCCCAC | PCF1 and PCF2 (bHLH) | 59 (11.66), 3e-003 |
ABRE-like | CTCCTCCA | ABI4(AP2) | 58 (12.05), 6e-004 |
Alfin1 binding site-like | GTGTGTTT | Alfin 1 (PHD finger protein) | 54 (12.50), 7e-004 |