Table 5 AI genes which co-localize with markers confirmed to respond during drought stress by selective genotyping. These genes are potential candidates for gene discovery
Chr# | Marker | P | R2 (%) | AI genes colocalizing with the markers | Estimated distance between markers and genes (kb) in the indica genome |
|---|---|---|---|---|---|
1 | RM6333 | ** | 21.12 | LOC_Os01g65400 (DNA polymerase I) | 52 |
LOC_Os01g65650 (receptor-like protein kinase HAIKU2 precursor) | 113 | ||||
RM11943 | * | 19.11 | LOC_Os01g64960 (chlorophyll A-B binding protein) | 188 | |
LOC_Os01g65130 (peptide transporter) | 48 | ||||
LOC_Os01g65220 (XRN 5'-3' exonuclease N-terminus domain) | 0.2 | ||||
LOC_Os01g65169 (proton-dependent oligopeptide transport) | 25 | ||||
LOC_Os01g64790 (AP2) | 306 | ||||
2 | RM5789 | ** | 24.48 | LOC_Os02g37030 (protein binding protein) | 0.5 |
RM3688 | ** | 24.33 | LOC_Os02g37060 (photosystem II kDa protein) | 10 | |
3 | RM3387 | * | 14.33 | LOC_Os03g02020 (stress responsive A/B barrel domain-containing protein) | 23 |
LOC_Os03g01360 (expressed protein) | 92 | ||||
8 | RM80 | * | 14.18 | LOC_Os08g38300 (core histone H2A/H2B/H3/H4) | 220 |
LOC_Os08g39150 (expressed protein) | 248 | ||||
LOC_Os08g39160 (formyl transferase) | 251 | ||||
LOC_Os08g39300 (aminotransferase) | 356 |