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Rice

Table 3 QTLs for ACE, DCE and PGWC detected in RIL population in Hainan and Hangzhou

From: QTL analysis for chalkiness of rice and fine mapping of a candidate gene for qACE9

Trait

QTL

Site

Chr.

LOD

P value

Genetic distance (cM)

PEV (%)

Subst. effect

Reported QTL

ACE

qACE1

Hainan

1

3.83

0.01

170.15–183.44

14.8

0.17

qPGWC-1a (Liu et al. 2011)

qPGWC1d (Zhao et al. 2015a)

qACE9

Hainan

9

3.36

0.01

7.59–13.04

12.2

0.16

 

qACE4

Hangzhou

4

2.01

0.03

158.65–164.02

8.5

0.05

 

qACE6-1

Hangzhou

6

4.01

0.01

0.00–10.92

16.2

−0.09

qPGWC-6 (Liu et al. 2011), qDEC6, qPGWC6 (Zhao et al. 2015a), qCA6-1 N-, qCA6-W+ (Peng et al. 2014)

qACE6-2

Hangzhou

6

3.79

0.03

10.92–22.12

9.2

−0.09

qCR6-H+ (Peng et al. 2014)

qACE7

Hangzhou

7

2.09

0.03

46.03–57.36

5.4

0.05

 

qACE9

Hangzhou

9

4.17

0.01

7.59–23.65

13.6

0.09

 

qACE12

Hangzhou

12

2.41

0.01

121.63–135.59

6.8

0.06

qWCR12-D- (Peng et al. 2014)

DCE

qDCE1

Hainan

1

3.43

0.01

208.31–225.92

11.2

−14.17

qPGWC.NH-1.2 (Bian et al. 2014)

qDCE4

Hangzhou

4

5.97

0.01

154.53–165.67

12.9

8.61

 

qDCE6

Hangzhou

6

11.54

0.01

15.04–21.31

30.6

−13.27

qCR6-H+ (Peng et al. 2014)

qDCE7

Hangzhou

7

2.72

0.03

70.43–79.87

5.6

−5.66

qPGWC-7 (Zhou et al. 2009), qWCA7-D+ (Peng et al. 2014)

qDCE9

Hangzhou

9

2.62

0.01

0.36–12.63

5.2

5.46

qDEC9, qPGWC9a, qPGWC9b (Zhao et al. 2015a)

qDCE12

Hangzhou

12

3.19

0.03

120.28–135.59

6.4

6.07

qWCR12-D- (Peng et al. 2014)

PGWC

qPGWC1

Hainan

1

9.14

0.03

208.31–225.48

11.5

−39.41

qPGWC.NH-1.2 (Bian et al. 2014)

qPGWC4

Hangzhou

4

7.19

0.01

158.65–166.49

16.3

24.98

 

qPGWC6

Hangzhou

6

11.36

0.01

16.68–21.31

30.5

−34.21

qCR6-H+ (Peng et al. 2014)

qPGWC7

Hangzhou

7

3.69

0.01

65.06–79.06

7.9

−17.38

qPGWC-7 (Zhou et al. 2009), qWCA7-D+ (Peng et al. 2014)

qPGWC12

Hangzhou

12

2.51

0.01

121.63–135.59

5.1

13.92

qWCR12-D- (Peng et al. 2014)

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