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Table 1 Specific primers used in this study

From: Down-Regulation of Cytokinin Oxidase 2 Expression Increases Tiller Number and Improves Rice Yield

Primer name

Sequence (5′ to 3′)

Target gene

Hygromycin-F

GACCTGATGCAGCTCTCGGAG

hptII

Hygromycin-R

TGCTCCATACAAGCCAACCACG

GUS-F

AAAAAACTCGACGGCCTGTGGG

GUS

GUS-R

GCATCTTCATGACGACCAAAGC

Ubiquitin pro.-F

CTGATGCATATACAGAGATGC

a CX3 or CX5

Nos ter.-R

TGACAGCTTATCATCGGATC

CKX2-F

GTCCACGACGGCGAGCTCAA

OsCKX2

CKX2-R

TCCATCTTGGCATCTCTCAG

Actin-F

GGTAATGTGTTGGACTCTGG

Actin

Actin-R

GCAGTGATCTTCCTTGCTCA

3′UTR-F

CGGTGACGAGGTGTTCTACAC

OsCKX2 3′ UTR

3′UTR -R

CCAAGATCTCGTCGTTCTGC

rRNA-F

GATAACTCGACGGATCGCACGG

17S rRNA

rRNA-R

GCCTGCTGCCTTCCTTGGATGTG

OsCKX1-F

GCACCCGTGGCTCAACCTG

CKX1

OsCKX1-R

GATGTCGGTGGCCGTCTGG

OsCKX3-F

TTTCTTATGCTGATGTGGGTG

CKX3

OsCKX3-R

GAACATTGCTAATCTGAGGTCC

OsSPL14-F

TGAATTTGACCAAGGAAAAC

SPL14

OsSPL14-R

ATCCAACGTAAAGCTTCTGA

D53-F

CCAAGCAGTTTGAAGCGAC

D53

D53-R

CCGCAAGTTTATCAAAGTCAA

OsTB1-F

CAAGAAATCTCGGCGGCTAG

TB1

OsTB1-R

CGAATTGGCGTAGACGAC

  1. ashRNA cannot be amplified directly by PCR. Thus, a 867 bp fragment containing partial promoter, shRNA and partial terminator were amplified for detecting the CX3 or CX5 gene