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Rice

Table 2 Allele combinations including a single gene-specific allelic variation

From: Influence of Multi-Gene Allele Combinations on Grain Size of Rice and Development of a Regression Equation Model to Predict Grain Parameters

Grain size-related traits Gene name Group name Germplasms GS3 GS5 GS6 GW2 qSW5/ GW8/ P value
GW5 OsSPL16
Grain length GS3 LA 9 B G N - N B <0.0001**
LB 5 A G N - N B
LC 33 C G N - N B
Grain width GS3 WE 3 A G N F K B 0.0324*
WD 10 B G N F K B
WG 6 C G N F K B
GS6 WN 3 B G N F I T 0.0442*
WV 3 B G O F I T
qSW5/GW5 WU 12 B H O F K J <0.0001**
WW 13 B H O F I J
WY 3 B S O F K J 0.0265*
WZ 3 B S O F I J
WC 32 C G N F N B <0.0001**
WI 6 C G N F K B
WH 10 C G O F N B 0.0129*
WL 6 C G O F K B
Grain length to width ratio GS3 RD 6 A - N - N B  
RA 12 B - N - N B <0.0001**
RB 37 C - N - N B  
qSW5/GW5 RP 20 B - O - I J  
RN 17 B - O - K J <0.0001**
RJ 3 B - O - N J  
RP 20 B - O - I J <0.0001**
RN 17 B   O   K J
RQ 6 B - O - I T 0.0184*
RO 10 B   O   K T
RE 7 C - N - K B <0.0001**
RB 37 C   N   N B
1000-grain weight GW8/OsSPL16 KA 52 - - N F N B 0.0276*
KB 8    N F N J
KM 21 - - O F I J 0.0035**
KN 9    O F I T
  1. The significance of allelic variation of each gene in corresponding grain size-related trait was indicated by P value. ** and * indicate the significance at 1 % and 5 % level, respectively. The following characters represent each allele
  2. A: A-allele type of GS3, B: B-allele type of GS3, and C: C-allele type of GS3
  3. G: Zhonghua11 type of GS5, H: H94 type of GS5, and S: Zhenshan97 type of GS5
  4. N: Type I of GS6 and O: Type II/III of GS6
  5. F: FAZ I type of GW2
  6. K: Kasalath type of qSW5/GW5, I: Indica II type of qSW5/GW5, and N: Nipponbare type of qSW5/GW5
  7. J: HJX74 type of GW8, B: Basmati type of GW8, and T: TN1 type of GW8
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