Table 1 Genes upregulated by Fe-deficiency and downregulated by excess Fe in roots

Os02g0306401

OsNAAT1

4.072

4.665

0.211

0.160

Os03g0237100

OsDMAS1

6.852

3.768

0.109

0.096

Os02g0649900

OsYSL2

53.191

54.448

0.439

0.498

Os02g0650300

OsYSL15

5.035

6.444

0.125

0.094

Os11g0134900

OsTOM1

10.903

5.724

0.078

0.064

Os03g0667300

OsIRT2 (0.67)

8.568

10.120

0.183

0.107

Os01g0952800

OsIRO2 (0.89) (0.91)

2.394

3.313

0.038

0.029

Os12g0282000

MIR (0.848), (0.94)

13.538

10.484

0.100

0.084

Os12g0570700

OsIDS1

5.992

9.164

0.370

0.318

Os03g0751100

OPT (0.91) (0.82)

3.410

2.244

0.147

0.091

Os01g0871600

TGF-beta receptor, type I/II (0.74) (0.79)

12.263

8.808

0.045

0.036

Os10g0567400

Rieske_[2Fe-2S]_region_domain_containing_protein

7.620

5.157

0.370

0.325

Os08g0527700

TGF-beta_receptor,_type_I/II_extracellular_region_family_protein (0.80) (0.83)

5.608

6.219

0.391

0.241

Os01g0871500

TGF-beta_receptor,_type_I/II_extracellular_region_family_protein (0.86) (0.89)

3.336

2.311

0.246

0.198

Os09g0129600

Site-specific_recombinase_family_protein

7.529

6.035

0.275

0.197

Os04g0306400

Ribose_5-phosphate_isomerase_family_protein

2.639

2.213

0.276

0.202

Os03g0439700

Protein_of_unknown_function_DUF1230_family_protein (0.81), (0.89)

7.024

8.104

0.071

0.055

Os01g0655500

Protein_kinase-like_domain_containing_protein (0.80) (0.88)

5.218

3.746

0.157

0.106

Os01g0494300

Non-protein_coding_transcript,_putative_npRNA (0.72) (0.74)

4.468

5.140

0.470

0.400

Os12g0236200

Non-protein_coding_transcript,_unclassifiable_transcript (0.82)

30.420

11.722

0.058

0.132

Os02g0707633

NONE Category (0.81) (0.85)

11.858

8.096

0.051

0.042

Os09g0118650

NONE Category (0.98) (0.88)

7.410

7.636

0.048

0.043

Os02g0779400

NONE Category

6.789

3.371

0.156

0.131

Os12g0508500

NONE Category

6.502

7.113

0.142

0.135

Os03g0615600

NONE Category (0.91) (0.96)

4.090

3.454

0.061

0.049

Os12g0435466

NONE Category (0.81) (0.85)

11.679

5.892

0.063

0.052

Os01g0608300

Conserved_hypothetical_protein (0.98) (0.94)

11.851

9.647

0.158

0.134

Os11g0262600

Conserved_hypothetical_protein (0.95) (0.98)

7.386

6.953

0.044

0.045

Os03g0431600

Conserved_hypothetical_protein (0.94) (0.99)

7.084

5.026

0.056

0.042

Os03g0725200

Conserved_hypothetical_protein

7.066

3.573

0.054

0.048

Os10g0195250

Conserved_hypothetical_protein (0.95) (0.96)

6.610

5.194

0.040

0.039

Os02g0594600

Conserved_hypothetical_protein

5.792

4.971

0.071

0.065

Os06g0294950

Conserved_hypothetical_protein (0.96) (0.96)

5.407

5.059

0.040

0.039

LOC_Os06g19095

Conserved_hypothetical_protein (0.98) (0.96)

5.407

5.059

0.040

0.039

Os01g0332200

Conserved_hypothetical_protein

5.279

5.794

0.459

0.203

Os10g0159066

Conserved_hypothetical_protein (0.80) (0.71)

4.907

5.267

0.110

0.082

Os05g0554000

Conserved_hypothetical_protein (0.91)

4.784

4.416

0.355

0.395

Os01g0689300

Conserved_hypothetical_protein (0.75) (0.76)

4.646

4.288

0.511

0.406

Os12g0236100

Conserved_hypothetical_protein (0.91) (0.95)

4.560

3.175

0.073

0.061

Os01g0953000

Conserved_hypothetical_protein

3.215

2.956

0.470

0.373

chr9_-_4113943-4114041

sORF (1.00) (0.94)

6.364

5.478

0.042

0.042

chr4_-_5708578-5708748

sORF (0.94) (1.00)

5.376

3.090

0.054

0.036

chr1_ + _43772594-43772752

sORF (0.83) (0.83)

3.181

4.281

0.249

0.263