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Rice

Table 3 Percentage of variation for Apparent Amylose Content (AAC) explained by the tested GBSSI molecular markers in the germplasm collection

From: Improvement of marker-based predictability of Apparent Amylose Content in japonica rice through GBSSI allele mining

Polymorphisms

Explained AAC variation (%)

p values

CTn (RM190)

74.9

0.000

T/G intron1

77.5

0.000

A/C exon 6

30.9

0.000

CTn/intron1

77.7

0.260 CTn

0.000 intron1

CTn/exon6

40.3

0.000 CTn

0.000 exon6

Intron 1/exon6

79.5

0.000 intron1

0.001 exon6

CTn/intron1/exon6

79.6

0.594 CTn

0.000 intron1

0.001 exon6

Intron1/exon6/-1,514

80.1

0.000 intron1

0.001 exon6

0.072 -1,514

CTn/intron1/exon6/-1,514

80.3

0.242 CTn

0.000 intron1

0.035 exon6

0.038 -1,514

intron1/exon6/-1,514/exon9

80.1

0.000 intron1

0.001 exon6

0.073 -1,514

0.965 exon9

CTn/intron1/exon6/-1,514/exon9

80.3

0.216 CTn

0.000 intron1

0.038 exon6

0.035 -1,514

  

0.675 exon9

  1. For each marker, the explained variation and the associated p-value considering each molecular marker singularly or in association with others is reported.
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