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Table 5 Gene-specific polymerase chain reaction primers used for the identification of major BB resistance genes

From: Development of breeding lines with three pyramided resistance genes that confer broad-spectrum bacterial blight resistance and their molecular analysis in rice

Resistance gene

Chr.no.

Marker name

Primer sequences used for gene detection

Expected size (bp)

Band type

Reference

   

Forward (5′-3′)

Reverse (5′-3′)

   

xa5

5

10603.T10Dw

GCACTGCAACCATCAATGAATC

CCTAGGAGAAACTAGCCGTCCA

280

Co-dominant

Jeung et al. (Unpublished)

Xa4

11

MP1 + MP2

ATCGATCGATCTTCACGAGG

TGCTATAAAAGGCATTCGG

150

Co-dominant

Sun et al.2003

Xa21

11

U1/I1

CGATCGGTATAACAGCAAAAC

ATAGCAACTGATTGCTTGG

1,400

Co-dominant

Wang et al. 1996