|
Data-set
|
Read type
|
Number of pre-processed reads
|
Uniquely mappeda
|
Uniquely & properly mappedb
|
Multiplec
|
Unmappedd
|
|---|
|
NIAS
|
SE, 36bp
|
59,344,842
|
38,193,181 (64.4%)
|
-
|
18,463,375 (31.1%)
|
302,057 (0.5%)
|
| | | |
[40,579,410 (68.4%)]e
| | | |
| |
SE, 51bp
|
50,981,527
|
34,124,172 (66.9%)
|
-
|
14,613,663 (28.7%)
|
385,876 (0.8%)
|
| | | |
[35,981,988 (70.6%)]
| | | |
|
CSHL
|
PE, 76bp
|
246,779,548
|
191,891,774 (77.8%)
|
185,630,272 (75.2%)
|
40,901,655 (16.6%)
|
13,986,119 (5.7%)
|
| | | | |
[190,608,407 (77.2%)]
| | |
| |
Unpaired PEf, 76bp
|
10,316,471
|
7,235,730 (70.1%)
|
-
|
1,909,048 (18.5%)
|
819,735 (7.9%)
|
| | | |
[7,587,688 (73.5%)]
| | | |
- a Number of uniquely mapped reads on the assembled pseudomolecules.
- b Number of uniquely mapped reads with proper distances between paired end reads.
- c Number of reads that mapped to multiple positions on the assembled pseudomolecules with the same score.
- d Number of reads that could not be mapped to the assembled pseudomolecules.
- e The numbers of reads in the square brackets includes mapped reads with lower mapping quality (MAPQ <20).
- f Unpaired reads for which one of the pair was discarded in the preprocessing and thus was mapped as a single-end read.
