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Rice
Figure 1 | Rice

Figure 1

From: Genome-wide identification and analysis of Japonica and Indica cultivar-preferred transcripts in rice using 983 Affymetrix array data

Figure 1

Expression patterns of japonica and indica eQTLs identified using 983 affymetrix array data points. From the rice Affymetrix microarray data available in the NCBI gene expression omnibus (GEO, http://www.ncbi.nlm.nih.gov/geo/), we used 983 arrays consisting of 595 indica and 388 japonica samples. Using a 2-fold change cut-off of japonica over indica expression and SAM analysis, we identified 490 loci showing preferential expression in japonica and 104 loci in indica. Blue color indicates low level of log2 intensity and yellow color indicates high level of log2 intensity. Green bar indicates indica samples and gray bar indicates japonica samples.

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