Skip to main content

Table 1 Genes with expression patterns similar to the MAs-biosynthetic and Met cycle-related genes

From: Rice genes involved in phytosiderophore biosynthesis are synchronously regulated during the early stages of iron deficiency in roots

  Gene locus Definitions   Expression ratio
     3 h 6 h 9 h 12 h 24 h 36 h
Metabolism          
  Os06g0639800 Cytochrome P450 family protein   0.70 0.69 1.16 0.87 7.91 3.27
  Os08g0562100 Sorghum chloroplast malate dehydrogenase-like (Fragment)   0.80 0.86 1.05 1.03 1.66 2.53
  Os09g0536700 Nodulin-like domain containing protein   0.77 0.83 1.29 1.31 2.45 3.51
  Os10g0440000 Cytochrome P450 family protein   0.73 0.83 0.85 0.80 2.48 3.17
Membrane protein          
  Os01g0878700 Amino acid transporter family protein   0.71 0.76 1.41 1.49 3.48 4.19
  Os03g0828600 Sodium/hydrogen exchanger family protein   0.48 0.75 1.23 1.47 2.78 5.78
  Os07g0258400 Metal transporter OsNRAMP1   0.66 0.89 1.30 1.24 2.93 4.34
  Os09g0440700 Copper transporter OsCOPT7   0.76 0.83 1.00 1.00 1.55 1.96
  Os12g0132500 MFS family protein TOM1-like   0.59 0.79 1.72 1.68 2.95 7.50
Transfactor          
  Os01g0952800 bHLH protein OsIRO2   0.74 0.91 1.19 1.11 2.00 3.06
Others          
  Os01g0546100 DUF6 containing protein   0.42 0.65 1.18 1.53 5.81 3.48
  Os01g0647200 Non-protein coding transcript   0.71 0.83 0.92 0.79 3.10 6.02
  Os02g0445100 Auxin-responsive family protein-like   0.67 0.58 1.40 0.77 2.32 2.05
  Os03g0204900 Hypothetical protein   0.67 0.76 1.34 1.26 2.64 3.62
  Os03g0256200 Hypothetical protein   0.68 0.69 1.19 1.17 2.29 2.92
  Os04g0675000 DUF789 containing protein   0.81 0.78 1.77 1.81 2.80 4.28
  Os05g0519300 DUF506 containing protein   0.88 0.69 1.00 0.83 2.17 5.51
  Os05g0551000 HHE domain containing protein   0.75 0.83 1.00 0.99 1.88 2.17
  Os07g0253600 (No Hit)   0.67 0.69 1.20 1.17 2.28 2.94
  Os08g0291000 (No Hit)   0.66 0.69 1.20 1.18 2.35 2.93
  Os09g0130300 Conserved hypothetical protein   0.50 0.82 1.14 0.91 1.85 2.71
  Os09g0345300 Leucine-rich repeat protein   0.66 0.70 1.02 1.04 2.32 2.62
  Os11g0129600 ELM domain containing protein   0.69 0.85 1.04 1.15 1.81 2.29
  Os12g0126200 ELM domain containing protein   0.70 0.86 0.99 1.05 1.79 2.27
  Os12g0236100 Conserved hypothetical protein   0.75 0.88 1.16 0.99 1.82 3.68
  1. Expression ratios in italics did not meet the selective criteria for signal intensities even when they were greater than 1.95.