Rice genes involved in phytosiderophore biosynthesis are synchronously regulated during the early stages of iron deficiency in roots

Itai, Reiko Nakanishi; Ogo, Yuko; Kobayashi, Takanori; Nakanishi, Hiromi; Nishizawa, Naoko K

doi:10.1186/1939-8433-6-16

Rice

Table 1 Genes with expression patterns similar to the MAs-biosynthetic and Met cycle-related genes

From: Rice genes involved in phytosiderophore biosynthesis are synchronously regulated during the early stages of iron deficiency in roots

	Gene locus	Definitions	Expression ratio
			3 h	6 h	9 h	12 h	24 h	36 h
Metabolism
	Os06g0639800	Cytochrome P450 family protein	0.70	0.69	1.16	0.87	7.91	3.27
	Os08g0562100	Sorghum chloroplast malate dehydrogenase-like (Fragment)	0.80	0.86	1.05	1.03	1.66	2.53
	Os09g0536700	Nodulin-like domain containing protein	0.77	0.83	1.29	1.31	2.45	3.51
	Os10g0440000	Cytochrome P450 family protein	0.73	0.83	0.85	0.80	2.48	3.17
Membrane protein
	Os01g0878700	Amino acid transporter family protein	0.71	0.76	1.41	1.49	3.48	4.19
	Os03g0828600	Sodium/hydrogen exchanger family protein	0.48	0.75	1.23	1.47	2.78	5.78
	Os07g0258400	Metal transporter OsNRAMP1	0.66	0.89	1.30	1.24	2.93	4.34
	Os09g0440700	Copper transporter OsCOPT7	0.76	0.83	1.00	1.00	1.55	1.96
	Os12g0132500	MFS family protein TOM1-like	0.59	0.79	1.72	1.68	2.95	7.50
Transfactor
	Os01g0952800	bHLH protein OsIRO2	0.74	0.91	1.19	1.11	2.00	3.06
Others
	Os01g0546100	DUF6 containing protein	0.42	0.65	1.18	1.53	5.81	3.48
	Os01g0647200	Non-protein coding transcript	0.71	0.83	0.92	0.79	3.10	6.02
	Os02g0445100	Auxin-responsive family protein-like	0.67	0.58	1.40	0.77	2.32	2.05
	Os03g0204900	Hypothetical protein	0.67	0.76	1.34	1.26	2.64	3.62
	Os03g0256200	Hypothetical protein	0.68	0.69	1.19	1.17	2.29	2.92
	Os04g0675000	DUF789 containing protein	0.81	0.78	1.77	1.81	2.80	4.28
	Os05g0519300	DUF506 containing protein	0.88	0.69	1.00	0.83	2.17	5.51
	Os05g0551000	HHE domain containing protein	0.75	0.83	1.00	0.99	1.88	2.17
	Os07g0253600	(No Hit)	0.67	0.69	1.20	1.17	2.28	2.94
	Os08g0291000	(No Hit)	0.66	0.69	1.20	1.18	2.35	2.93
	Os09g0130300	Conserved hypothetical protein	0.50	0.82	1.14	0.91	1.85	2.71
	Os09g0345300	Leucine-rich repeat protein	0.66	0.70	1.02	1.04	2.32	2.62
	Os11g0129600	ELM domain containing protein	0.69	0.85	1.04	1.15	1.81	2.29
	Os12g0126200	ELM domain containing protein	0.70	0.86	0.99	1.05	1.79	2.27
	Os12g0236100	Conserved hypothetical protein	0.75	0.88	1.16	0.99	1.82	3.68

Expression ratios in italics did not meet the selective criteria for signal intensities even when they were greater than 1.95.

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