Table 2 Characteristics of the InDel markers including their chromosome locations and their annotations
Genes | Sequence | Size | Tm | Position | Annotation |
|---|---|---|---|---|---|
| Â | Â | Â | Â | (Chromosome; Mb) | Â |
1gAP006530 | F: ACCCCCAGCATCTCCTCGTC | 261 | 55 | 1; 15.0 | intergenics |
| Â | R: ACTGGGCCAGGGCTGAGTCT | Â | Â | Â | (close to OsS01g26950) |
1gAP003855 | F: CTTGCGCGGTCGAGTAGACG | 289 | 55 | 1; 25.7 | intergenics |
| Â | R: AGCGGTGTGATCCCCAAAGG | Â | Â | Â | (close to Os01g45310) |
Os01g48270 | F: AGGCAAGCATTGGAAATAGG | 210 | 55 | 1; 27.6 | AAA-type ATPase family |
| Â | R: TGGTAACAATCGCACCTTGA | Â | Â | Â | protein, putative, expressed |
Os01g57310 | F: CGATGAACTGGAACACCATGA | 290 | 57 | 1; 33.1 | rp1-like protein, putative, expressed |
| Â | R: GGCAACAGAGCCATACTTTGA | Â | Â | Â | Â |
Os01g72550 | F: CCG AGT TCA GGC GAG TGT TC | 382 | 55 | 1; 42.4 | OsCML19-Calmodulin- |
| Â | R: TCA TTG TTT GGC ACT CCT CG | Â | Â | Â | Related calcium sensor protein |
Os02g48500 | F: AGGCAATGGAGCACCAAGTT | 277 | 57 | 2; 29.6 | hypothetical protein |
| Â | R:TTGTACTGTTGGGGTTGGCA | Â | Â | Â | Â |
Os04g22440 | F: ATCCTCGATGACACCGACCT | 352 | 57 | 4; 12.6 | hypothetical protein |
| Â | R: TGCCCTTGGTAACTTGCTTCT | Â | Â | Â | Â |
Os04g30430 | F: GCTTCTCCTGGTTGTATGC | 163 | 52 | 4: 18.0 | nuclear transport factor 2, |
| Â | R:AAAATAGGGAGGCAGATAGAC | Â | Â | Â | putative, expressed |
4gAL606639 | F: TTTTGTGAAACTTGACCCTC | 112 | 52 | 4; 28.8 | intergenics |
| Â | R: GCGTCCATGTCTTTATTGTG | Â | Â | Â | (close to OS04g48750) |
5gAC137622 | F: CTCGCTGTTTACTGACTGG | 155 | 52 | 5; 13.8 | intergenics |
| Â | R: TTTGATGTACTGCCTGCTCT | Â | Â | Â | Â |
Os06g11600 | F: TGCTGTGGGGCCTCTAATGA | 211 | 55 | 6; 6.1 | growth regulator related |
| Â | R: TGAGACAACACCCACCCACC | Â | Â | Â | protein, putative, expressed |
Os06g51110 | F: GAT GGC AAA CAC CAA CAG GA | 340 | 55 | 6; 30.9 | cyclin, putative, |
| Â | R: GAG GGT TGG TTT GCC AGT GT | Â | Â | Â | expressed |
Os07g26740 | F: GGGGAAGCGTCGTTATGACC | 259 | 55 | 7; 15.4 | 60 S ribosomal protein L44, |
| Â | R: CCTTGATCGGGTGCTGAGAG | Â | Â | Â | putative, expressed |
Os07g027000 | F: GCGCACTGTGATGCAAGATG | 358 | 55 | 7; 15.6 | retrotransposon protein |
| Â | R: GACCTTGTCGGGATGTGCAG | Â | Â | Â | putative, unclassified |
Os07g27590 | F: CTGTTGAAGGGGAGGAGCGT | 244 | 55 | 7;16.1 | retrotransposon protein, |
| Â | R: TACGGTGCACTTCGGTCGTC | Â | Â | Â | putative, unclassified |
Os08g41690 | F: TGCGAGGATGGAGTTCTTGA | 250 | 55 | 8; 26.3 | expressed protein |
| Â | R: CAATCCCTTCACCAGAAGGAC | Â | Â | Â | Â |
Os08g41950 | F: GTC AGC CTG AAG TGC AGC AG | 418 | 55 | 8; 26.5 | OsMADS7 - MADS-box |
| Â | R: CGG CAC CAC ATA TAT GCC AC | Â | Â | Â | family with MIKCc type- |
| Â | Â | Â | Â | Â | box, expressed |
Os09g08960 | F: GGACTGAAAACACGATCGCA | 280 | 55 | 9; 4.7 | retrotransposon protein, |
| Â | R: TTTTGGGGATCATCATCGACT | Â | Â | Â | putative, unclassified |
Os11g41390 | F: AAGAAAAATATCTATTGAGGAGTG | 178 | 52 | 11; 24.3 | hypothetical protein |
| Â | R: GGAGGACCATAAATGACGG | Â | Â | Â | Â |