Chromosomal Location of HWA1 and HWA2, Complementary Hybrid Weakness Genes in Rice

Ichitani, Katsuyuki; Taura, Satoru; Tezuka, Takahiro; Okiyama, Yuuya; Kuboyama, Tsutomu

doi:10.1007/s12284-011-9062-2

Rice

Table 2 Primer sequences and locations of the indel markers designed for this study

From: Chromosomal Location of HWA1 and HWA2, Complementary Hybrid Weakness Genes in Rice

			Location on IRGSP pseudomolecules Build05
Marker name		Primer sequences (5′–3′)	Chromosome	Position		Source of DNA polymorphism information
Marker name		Primer sequences (5′–3′)	Chromosome	From	To	Source of DNA polymorphism information
KGR1M47	F	CACAAATAGAATTACTGATGAAACCTT	1	38529588	38529747	Shen et al. 2004
KGR1M47	R	CGTTACCGCTTATGTAGAGTCATC	1	38529588	38529747	Shen et al. 2004
KGR2M10	F	CATACATGGATGTCTAGTCGAAGA	2	6465517	6465683	Shen et al. 2004
KGR2M10	R	CAGTTCCAGTAAGTACATGGGTTT	2	6465517	6465683	Shen et al. 2004
KGS0328	F	ATCTAGCAAAATTATTCGAGCAGAA	3	31067890	31068058	Monna et al. 2006
KGS0328	R	ACTTTACAGTAACAAGGGGTGCAA	3	31067890	31068058	Monna et al. 2006
KGR4M30	F	CAAAATAGGGAGGCAGATAGACA	4	18395635	18395794	Shen et al. 2004
KGR4M30	R	CTCCTGGTTGTATGCTCGTAAAT	4	18395635	18395794	Shen et al. 2004
KGS0049	F	AAATTATACTTCCAATCAAGCATCAAG	4	22809557	22809823	Monna et al. 2006
KGS0049	R	AATTGTATTGGATTGGAGCTGGT	4	22809557	22809823	Monna et al. 2006
KGR4M43	F	GAGGTTATCCTCCCTAACACCAG	4	25116441	25116556	Shen et al. 2004
KGR4M43	R	TGCCAAATACAATATGACCACAA	4	25116441	25116556	Shen et al. 2004
KGS0051	F	CGAAAACAGTTAGGTGTTTGTTAGG	4	35483948	35484104	Monna et al. 2006
KGS0051	R	CTTACATGTAGTACAAACAACCCACA	4	35483948	35484104	Monna et al. 2006
KGS0494	F	GATGGCTAGCTTGACTCCTGAATA	6	22083785	22084001	Monna et al. 2006
KGS0494	R	CTCTAGGATACAATCATGGCAAACT	6	22083785	22084001	Monna et al. 2006
KGS0135	F	ACCTCATTTTATTTCAACATTGCAG	8	6028192	6028300	Monna et al. 2006
KGS0135	R	CTTCCTGACCAAGTTAAACCCCTA	8	6028192	6028300	Monna et al. 2006
KGR8M46	F	CGAATAATTTGTAGCCGAGAAAA	8	28228891	28229086	Shen et al. 2004
KGR8M46	R	GCAGAGTCCAGAGAAGATCCAT	8	28228891	28229086	Shen et al. 2004
KGR10M40	F	CGTTTAATTTACGTGCGAATAGG	10	19966648	19966807	Shen et al. 2004
KGR10M40	R	AACCTGAGGCACTAGTTCGTTATC	10	19966648	19966807	Shen et al. 2004
KGS0342	F	ATACACACAGCAGACATAAGGTGAT	10	14305320	14305584	Monna et al. 2006
KGS0342	R	AATAACCGTTTGATTGGACTAAAAA	10	14305320	14305584	Monna et al. 2006
KGS0185	F	TGACTACAGAAATAGTGCAGCTTCT	11	24091407	24091582	Monna et al. 2006
KGS0185	R	CCCCCTCCTTGACTTTGG	11	24091407	24091582	Monna et al. 2006
KGC11M1	F	GGCAGGAGAGGAGAAACTGA	11	25263891	25263963	This study
KGC11M1	R	GAAGAAAGTGACCATGGATGAA	11	25263891	25263963	This study
KGS1797	F	AGTGGTGAGCTGCTAACAAATCTCT	11	29167452	29167572	Monna et al. 2006
KGS1797	R	GCCGAGCGAGCTGAGTATC	11	29167452	29167572	Monna et al. 2006
KGS1739	F	AGAGACGCAGGAGCTGCTTA	12	1999528	1999818	Monna et al. 2006
KGS1739	R	CATGACCCTTCTATGGCAATTAT	12	1999528	1999818	Monna et al. 2006

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